Oncorhynchus gorbuscha (pink salmon): 123990738
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Entry
123990738 CDS
T07892
Name
(RefSeq) afadin-like
KO
K05702
afadin
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04517
IgSF CAM signaling
ogo04520
Adherens junction
ogo04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
123990738
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
123990738
04530 Tight junction
123990738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RASSF8-10_RA
RA_3
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
123990738
NCBI-ProteinID:
XP_046147515
LinkDB
All DBs
Position
LG12:complement(24025552..24153804)
Genome browser
AA seq
1831 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKAQSNGPEREKEGVMQNFKRTLSKKEKKKEKKREKEAHISDGD
EQALSREDGENSRLAAEVYKDMPENSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRP
DSGGTLRIYADSLKPNIPYKTILLSTTDMADFAVVEALEKYGLEKENPREYCIARHTDDK
SGKEIILDDTECPLQIFRDWPNDRGDLVFQLKKRPPDYVPKKGRKPEDKGPRGKGMDVPL
HGSLPPEKLPYLVELSPGRGNHYGYYTYRHHEDGSDSRDKPKLYRLQHSVTEVGSDTTDD
GSIQLFGPGILPHHCKLMHTEGLVTVTPHSLEAETYVDGQRVTETTVLRSGATLQFGASH
VFKFVDPSYDHSMGKGGPGPMMRGRHKSGSVPETTFDLQGDLHSGTALSTSKSSGKLEME
RSSNGSERGMVKPMIRGEQQDSRSQDSLSPEVTLPASIEFRDNSEDTFLTAIINYTNSST
VHFKLSPTYVLYMTCRYVMSSHYRPDIGPSERTHKVIAIVNKMVSMMEGVIQKQKNIAGA
LAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVQCLQSDLSNYMPAFLD
DPEEQNNQRPNIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNKLVMEAD
SGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSMQDVQNIH
NTCFKLNSLQLNALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGREVQLEEDP
DLQLPFLLPEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTIHFEGVDCD
SHFSADNSDLQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVKGGAADMD
GRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPM
MPRASQGGRDKNGKLRPKSEGFELYNNSVQNGSPESPQADWQAYPEPRKMSGEERLLKNR
ADHRSSPNVANQSQSPGGKAVYTRGPGTKITSVSTGNLCVDDEPSPPHPEAYPIPTQTYP
REYFTIPASKSTNRMDSAPGQIYADDRGPPGPMEDHHHNSIAMQRVDHSQEELSEDLVHL
HQQQQREADYQRGSGEHWVNHHQVSSSVESSTSSQEHLNYSSSSSNKTQSNHKSGPGRWK
TPGPIAPHPGPVAQATRTDLPPPPPPPPPVHYQDFELQPDLPLPPPPSTTQQQAAAADRK
KREEQQRWYEKEKARLEEERERKRREQERKLGQVRNPAQVPHPYLPSQGQQQAQQQQPPR
PEKLSTLPRAGTLPPQGNPMDTVIRELLPQQQPRTIERRDLQYITISKEELSSSDSLSPD
PWKRDAREKLEKQQQLHIVDLLDREIQDLQAKPERTAEESDRLRKLMLEWQFQKRLQESK
QSDEEDEEDDDEDVDTMMIMQRLEAEKRARQTAVPAISVLDLLQDEERRRKQQLEEIRKR
EAEDRAKQEEERRWREEERARREVDEKRRQEEEYYTRLEEGRRRQHEEAERKLLTPDEPG
LYRPPLPRDYQPQPPPPTASPATTATNSPPPPPQRNTSYLKTQVVSPDALYTAKFVSYND
EEDEDTTGLAGFNSYTGNTTGVVGSGEVYKDPREKWTKGGQEQENTLTEGAPESMTFKER
QRLFSQGKEVSNKVKASRKLMELENELNTKQ
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagcggcggaaactagccgatatcataaaccactggaac
gccaaccggcttgacctgttcgagatcagccaacccaccgaggacttagagttccacggc
gtgatgcgtttctacttccaggaccgcgtagcagggaactttgccaccaagtgtatccgc
gtgtcctccacggccaccactcaggatgtcatcgagacgctggccgagaagttccggccc
gacatgaggatgctctcctcgcccaaatactccctctacgaggtccatgtcagcggggaa
gaacggaagctggacctggatgagaagccactggttgtgcagctcaactggaacaaagac
gaccgcgagggacgtttcgtcctcaagaatgagaacgacatcatccccaagaaggcgcag
agcaacgggccggagagggagaaggagggggtaatgcagaacttcaaacggacactgtcc
aagaaagagaagaagaaggagaagaagcgagagaaggaggctcacatttctgacggagat
gagcaagcactgagcagagaagatggtgagaactccagactggcggcggaggtgtacaag
gacatgccggagaacagcttcacccggaccatctccaaccctgaggtggtgatgaagagg
aggcggcagcagaaactggagaagaggatgcaggagttccgcagcagcgacggcaggcca
gactcgggggggacgttgaggatctatgcagacagtctgaaacccaatatcccctataag
accatcttgctgtccacgacagacatggcagactttgctgtggtggaggctctggagaag
tacggcctggagaaagagaacccccgggagtactgcatcgccaggcacacagatgacaag
tctgggaaggagatcatcctggatgatacagagtgtcctcttcagatcttcagagactgg
cccaacgacagaggagacctagtattccagctgaagaagagacctccagactacgtgcca
aagaagggccgcaagccagaggacaagggccccagggggaagggcatggacgtgccactg
catgggtctctacccccagagaaactgccttacctggtggagctcagcccagggaggggg
aatcactatggctactacacctatcggcaccacgaagatggctcagactccagagacaaa
ccgaaactctaccgcctgcagcacagtgttactgaggtgggctcagacactacagacgac
ggctccatccagctgtttggtccaggtatcctgccccaccactgtaaactgatgcataca
gagggtttggtgacagtgacaccacacagtctggaggctgagacttacgtggacggccag
cgtgtcaccgagaccaccgtgctgcgaagcggagccacactgcagttcggcgcctcccac
gtgttcaagtttgtggaccccagctacgaccacagcatgggcaagggagggcccggacca
atgatgagaggcaggcacaagtcaggaagtgttcctgagacgacctttgacctgcaaggg
gacctccacagtgggacggccctctccaccagcaagagctcagggaagctggaaatggag
cgttcatccaacggcagcgagagaggcatggtcaaacccatgatccgcggggagcagcag
gacagcaggtcccaggacagcctgagcccagaagtgacgttgccggccagcatcgagttc
agggacaactccgaagataccttcctgacggccatcatcaactacaccaacagctccacg
gtgcacttcaagctgtccccaacctacgtgttgtacatgacctgtcgctacgtcatgtcc
agccactaccggcccgacatcggcccctcggagcgcacccacaaagtcatagccatcgtc
aacaagatggtgagcatgatggaaggagtcatccagaagcagaagaacattgcgggggcc
ctggctttctggatggccaatgcctcagagctgctcaacttcatcaagcaggacaaggat
ctgtcgcgcatcacactggacgcccaggatgtgctggcacacctcgtccagatggccttc
aagtacctggtccagtgtctgcagtctgacctgagtaactacatgcctgccttcctggac
gacccagaggaacagaacaatcaaaggcccaacatagaggatgttttgcacaccctgacg
ggcgccatgtcgctgctgcgtcgttgccgtgtcaacgcggcgctgaccatccagctgttc
tcccagctcttccacttcatcaacatgtggctgttcaacaagctggtgatggaggccgac
tctggactgtgttcacactactggggcgccatcctccggcagcagctcagccacatcgag
gcctgggcagagaaacagggcctggagctggctgctgactgccacctcagtcgcatcgta
caggctacgactctcctcaccatggacaagtactccatgcaagacgtgcagaacatccac
aacacctgcttcaagctgaactccctgcagctcaacgccctcatgaccaactaccactgt
gctcccgacgagccttacatccccccagaacttatagaccacgtggttgccgtggcggag
aacacagcagatgagctggctcgtagtgacggccgagaggtccagctagaggaggaccct
gacctgcagctgcccttcctgctgcccgaggacggctactcctgcgacgttgtgaggaac
attcccaacggattccaggagttcctggaccccctttgtcagagaggattctgtcggcta
acccctcacccgcgctcccctgggacctggaccatccactttgaaggagtcgactgcgac
agccacttctctgcagacaactcagacctgcaaatgcggaaggaaccggaagttgtgacg
gtcaccctgaagaagcacaatggcatgggcctcagcattgtggctgccaagggtgctggg
caggacaagctcgggatctacatcaagtctgttgtgaagggaggcgcggctgacatggac
gggcgtctggctgcaggggaccagctgctgagtgtggacggccgcagcctggtgggcctc
tcccaggagagggctgcggagttgatgacgaggacaggctctgtggtgacactggaggtg
gccaaacagggagccatctaccacggcctggccacgctcctcaaccagccttctcctatg
atgcccagagcgtcgcaaggagggcgtgacaagaatggtaaactgagaccaaagagcgaa
ggctttgaactgtacaacaactcggtccagaacggctctccagagagcccccaggccgac
tggcaggcctacccagaaccaaggaagatgagcggggaggaaaggctactgaagaaccgg
gccgaccaccgctccagccccaacgtggccaaccagagccagagtccgggagggaaggcc
gtctacacacgaggacctgggaccaagatcacctctgtctccacgggcaacctgtgtgtt
gacgacgagccctctcctcctcatccggaggcctatcctattcccactcagacctacccc
agggaatacttcaccatcccagcctccaagtctacgaaccggatggactcggccccagga
cagatatacgctgacgacaggggtcctcccggccccatggaagaccaccaccacaacagc
atagctatgcagcgggtggaccactctcaggaggagctgtctgaggacttggtccacctg
caccagcagcagcagagagaggctgactaccagcggggcagtggggaacactgggtcaac
caccaccaggtctcctcctctgtggagtcctccacctccagccaggagcacctcaactac
tcctcgtcctcctccaacaagacccagagcaaccacaagagtgggccgggacgctggaag
acccccggccccatcgctccccacccaggccccgtggcccaggccacacgcacggacctc
cctccccctccaccgccccctccccctgtacactaccaggactttgagctccagcccgac
ctgcccctgccccctcctccctcgaccacccagcagcaggctgccgccgccgaccgcaag
aagcgcgaggagcagcagcgctggtatgagaaggagaaggcccggttagaggaggagagg
gagaggaagaggagggagcaggagaggaagctgggacaggtccgtaacccagctcaggtg
ccccatccctacctcccctcccagggccaacagcaggcccagcagcagcagccccccagg
ccagagaaactgtccaccctgcccagagcgggcaccctgccccctcagggtaacccaatg
gacacagtgatcagagagctgctcccccagcagcagccccgcaccatcgaacgccgggac
ctacagtacatcacaatcagcaaggaggagctgtcttccagcgacagcctgtccccagac
ccctggaagagagacgcccgggagaagctggagaagcagcagcagctgcacatcgtagac
ctgctggacagggagatccaggacctgcaggccaagccggagcgtacggctgaggagagc
gaccggctcaggaagctgatgctggagtggcagttccagaagagactgcaggagtccaag
cagagtgatgaggaagatgaggaggatgacgacgaggacgtggacaccatgatgatcatg
cagcggctggaggcagagaagagagcaaggcagactgctgtcccagcaatctctgttcta
gacttgttgcaggacgaggagcggcggaggaagcaacagctggaggagatccgtaagcgc
gaagcggaggaccgggccaaacaggaggaggagagacgctggagagaggaggagagggcc
agacgagaggttgatgagaagaggaggcaggaggaggagtactacacacgtctggaggaa
gggcggcgccggcagcacgaggaggccgagcgcaagctgctgacgcctgacgagcctggt
ctgtacagacctcccctccccagggactaccagcctcagcccccccctcccactgcatcc
cccgcaaccactgccactaacagtccaccacccccgcctcagagaaacacttcctacctc
aaaacccaggtcgtctcccctgacgccttgtacactgccaagtttgtctcgtacaatgac
gaggaggatgaggacactacaggcctagcaggatttaattcatacactggaaacacaacc
ggggttgtaggatcaggagaagtttacaaggacccgcgagagaagtggacgaaaggtggt
caagaacaggaaaacactttaactgaaggagccccggagagtatgacattcaaggagcgc
cagcggcttttttcccaagggaaggaagtatccaacaaagtcaaggcctcgcgaaaactc
atggagctggaaaatgaactcaatacaaagcagtag
DBGET
integrated database retrieval system