KEGG   Oncorhynchus gorbuscha (pink salmon): 123991047
Entry
123991047         CDS       T07892                                 
Symbol
smx5
Name
(RefSeq) smx5
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018  RNA degradation
ogo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123991047 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123991047 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogo03019]
    123991047 (smx5)
   03041 Spliceosome [BR:ogo03041]
    123991047 (smx5)
Messenger RNA biogenesis [BR:ogo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123991047 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123991047 (smx5)
Spliceosome [BR:ogo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123991047 (smx5)
 Complex C
  U2 snRNP components
    123991047 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 123991047
NCBI-ProteinID: XP_046148149
LinkDB
Position
LG02:complement(3819284..3826187)
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgcttttctactcctttttcaagtccctggtggggaaggacgtggtggtggagctcaaa
aatgacttgagcatctgtggaacacttcactctgttgatcagtacctgaacattaaactg
acggacatcagtgtcacggatccagagaagtatccacatatgttatcggtgaagaactgt
ttcatccgaggctctgtggtgcggtacgtccaactgcccgcagatgaggttgacactcag
ctgttacaggacgctgctcgcaaggaggcactgcagcagaagcaatga

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