Oncorhynchus gorbuscha (pink salmon): 123991169
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Entry
123991169 CDS
T07892
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123991169 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123991169 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ogo04812
]
123991169 (vim)
04147 Exosome [BR:
ogo04147
]
123991169 (vim)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
123991169 (vim)
Cytoskeleton proteins [BR:
ogo04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
123991169 (vim)
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123991169 (vim)
Exosomal proteins of other cancer cells
123991169 (vim)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
TPR_MLP1_2
DUF1664
BLOC1_2
Tropomyosin
TolA_bind_tri
Laminin_II
GAS
DUF2935
Baculo_PEP_C
CENP-F_leu_zip
Trimer_CC
Motif
Other DBs
NCBI-GeneID:
123991169
NCBI-ProteinID:
XP_046148408
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All DBs
Position
LG12:59232978..59241396
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AA seq
462 aa
AA seq
DB search
MNRTTNRQTTSSSSYKRMFGGEGRPSVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIY
ASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRF
LEQQNKILLAELEQLKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNMGEDIE
RLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEIIFLRKLHDEEVA
ELQAQIQDQHVQIDMDVAKPDLTAALRDVRVQYETLASRNLQDSEDWYKSKFADLSEAAN
RNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTIS
RLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNL
RESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggc
ggcgaaggacggcccagtgtcgggatggctcggtccaccttgtctagccgccagtactcg
agcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatttac
gcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcgtcggatacc
gtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgag
aaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgcttt
ctggagcagcaaaacaagatcctgttagcggagctggagcagctaaagggcaaaggcgcg
tcccgtatcggggatctgtacgaagatgagatgagggatctgcggaggcaggtggaccag
ctcaccaatgagaaagcccatgtcgaagtggaccgggacaacatgggagaggacatcgag
aggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctg
cagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaag
gtggagtctcttcaggaggaaataatcttcctcaggaagctgcatgatgaggaggttgct
gagctgcaggcacagatccaggatcagcatgtccagattgatatggatgtggccaagcct
gatctgacggctgccctgagggacgtgcgtgtgcagtacgagaccctggccagcaggaac
ctccaggactctgaagactggtacaagtccaagtttgctgacctgtcggaggctgcaaac
cgtaacaccgatgccatccgccaggccaagcaggaggctaacgagtacaggcgtcaggta
caggccctaacctgtgaggtggattctctcaaaggaactaatgagtccatggagcgtcag
atgagggagctggaggagagctttggctgcgaggctaataacttccaggacaccatctct
cgcctggaagacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtac
caggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctg
ctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacctg
agagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatc
aagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgac
ttggagtga
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