KEGG   Oncorhynchus gorbuscha (pink salmon): 123991169
Entry
123991169         CDS       T07892                                 
Symbol
vim
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    123991169 (vim)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogo03019]
    123991169 (vim)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ogo04812]
    123991169 (vim)
   04147 Exosome [BR:ogo04147]
    123991169 (vim)
Messenger RNA biogenesis [BR:ogo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     123991169 (vim)
Cytoskeleton proteins [BR:ogo04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     123991169 (vim)
Exosome [BR:ogo04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   123991169 (vim)
  Exosomal proteins of other cancer cells
   123991169 (vim)
SSDB
Motif
Pfam: Filament Filament_head TPR_MLP1_2 DUF1664 BLOC1_2 Tropomyosin TolA_bind_tri Laminin_II GAS DUF2935 Baculo_PEP_C CENP-F_leu_zip Trimer_CC
Other DBs
NCBI-GeneID: 123991169
NCBI-ProteinID: XP_046148408
LinkDB
Position
LG12:59232978..59241396
AA seq 462 aa
MNRTTNRQTTSSSSYKRMFGGEGRPSVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIY
ASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRF
LEQQNKILLAELEQLKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNMGEDIE
RLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEIIFLRKLHDEEVA
ELQAQIQDQHVQIDMDVAKPDLTAALRDVRVQYETLASRNLQDSEDWYKSKFADLSEAAN
RNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTIS
RLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNL
RESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggc
ggcgaaggacggcccagtgtcgggatggctcggtccaccttgtctagccgccagtactcg
agcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatttac
gcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcgtcggatacc
gtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgag
aaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgcttt
ctggagcagcaaaacaagatcctgttagcggagctggagcagctaaagggcaaaggcgcg
tcccgtatcggggatctgtacgaagatgagatgagggatctgcggaggcaggtggaccag
ctcaccaatgagaaagcccatgtcgaagtggaccgggacaacatgggagaggacatcgag
aggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctg
cagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaag
gtggagtctcttcaggaggaaataatcttcctcaggaagctgcatgatgaggaggttgct
gagctgcaggcacagatccaggatcagcatgtccagattgatatggatgtggccaagcct
gatctgacggctgccctgagggacgtgcgtgtgcagtacgagaccctggccagcaggaac
ctccaggactctgaagactggtacaagtccaagtttgctgacctgtcggaggctgcaaac
cgtaacaccgatgccatccgccaggccaagcaggaggctaacgagtacaggcgtcaggta
caggccctaacctgtgaggtggattctctcaaaggaactaatgagtccatggagcgtcag
atgagggagctggaggagagctttggctgcgaggctaataacttccaggacaccatctct
cgcctggaagacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtac
caggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctg
ctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacctg
agagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatc
aagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgac
ttggagtga

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