Oncorhynchus gorbuscha (pink salmon): 123991306
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Entry
123991306 CDS
T07892
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6 isoform X1
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
123991306 (rnf6)
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123991306 (rnf6)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123991306 (rnf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF6_N
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_4
zf-P11
zf-RING-like
Prok-RING_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
123991306
NCBI-ProteinID:
XP_046148737
LinkDB
All DBs
Position
LG12:complement(68561293..68567563)
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AA seq
739 aa
AA seq
DB search
MDSVVLTWLMAKADSMVMDPPSGRDERRRQAERLRREEAYYHFINELSEEEYRLMRDSNL
LGTPGEVTAEELRQRLDGAKERVSSQPRPEPLPQNTEAGEEEGSSVEGEESEGGAATAEP
GAETSNGDSLLEWLNTFRRTGNATRSGQSGNQTWRAVSRTNPNSGEFRFSLEININHEQP
EPGEHSDAPDPSELSPVPPPSTASSASIRTAPYTPARPSPYPLPRATQGRRAQIRRTRSS
TTIPLTPAPIITPLPPPTALSGTEALNLPPPPVPITPPILQDQISPPQLQPPSRASSPGE
GQDEGVPTLDFPRVPPQSGPQVASVGRESRSSRTRSRGRTRRAAAGGGTTSRSSRRRSRS
PLQRNPALNSVTLPPSGGNGVSNNGHTAEPGNRTASVSMETGEAVSEPAVLAEPGPEAGE
QEGEAHSAGSGGAGGVRRHPTIMLDLQVRRIRPGENRDRDSIASRTRSRARAAENTVTFE
SDSGGFRRTISRSERAGIRTYVSTIRIPLRRISETGLGEPSSTALRSILRQIMTGFGELS
SLMETEADAETTEGTPGHQDPAEPNANTNTTQTYHSHSNESGTVAGGQAGETETEREGGG
DEEEGVHGRLGGSDNSGIPIPDDGRPMSRDTNNLVENGTLPILRLAHFFLLNDEEDEEHP
RGLTKEQIDILATRTYGQASLEGEAGRACSVCINDYAQGNKLRRLPCAHEFHIHCIDRWL
SENNTCPICRQPILPAHQD
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgttgttttgacatggcttatggctaaagcggattccatggtgatggaccct
cctagcgggcgagacgagcggcggcgtcaggcagagcgtcttcgacgggaggaggcgtac
tatcacttcatcaacgagctgagtgaggaagagtaccgccttatgagagacagcaacctg
ctgggcacacctggtgaggtgacagcggaggagctacggcagcgcctggatggggcaaag
gagcgtgtgtcatctcagccccgccctgaaccactcccacagaacactgaggccggagag
gaggaggggagcagcgttgagggggaggagagcgagggaggggcagctactgctgagccg
ggagcagagacgtctaacggggactcactgctggagtggctgaacaccttccgacgcaca
gggaacgccacgcgcagtggccagagcggaaaccagacgtggcgcgcggtcagccgcacc
aaccccaacagtggagagttccgcttcagcctggagatcaacatcaaccatgagcagcca
gagccaggggagcacagtgatgcccccgacccctcagagctgtcccctgtcccccctcca
tccacagcctcctcagcctcaatacgcactgccccctacacccctgcccggccctccccc
tatcccttacctcgagccacccagggcaggagggctcagatccgccgtacacgcagtagt
accaccatccctctgactcccgcacccatcatcacacccctgcccccccctactgctcta
agcggtacagaagccctcaacctcccaccacccccagtccccatcacaccacctatcctt
caggatcaaataagccctccacagctccaacccccaagcagagcttcctccccaggggag
gggcaggatgagggggttcctaccctggacttcccccgtgtaccgccccagtctggcccc
caggtggcgtctgtggggcgtgagtctcgtagcagcaggactcgatctcgcggccggacc
cgcagggctgcagcaggaggtgggactacctcccggtcgtctaggagacgcagccgctcc
cctcttcagagaaaccccgcccttaactcagttaccttgcctcctagtggtgggaatggt
gtctctaataatggccacactgctgagcccggaaacagaactgcttctgtctccatggag
accggtgaggccgtgtcagagccggctgtactagcagagcctggcccagaggcaggtgag
caggagggagaggcacactcggccgggtcgggaggtgcagggggggtgcggcgccacccc
accatcatgctggatctgcaggtgcggcgcatccgaccgggagagaaccgggaccgggac
agcatcgccagccgaacccgttcccgggcccgcgccgccgagaacactgtcaccttcgag
agcgacagcgggggcttccggcgcacaatctcccgctcggagcgggccgggattcggacc
tacgtcagcaccatccggatccctctgaggaggatcagcgagactggattgggggagccc
agctccaccgccctgcgctccatcctcagacagatcatgaccggcttcggggagctcagc
tccctcatggagacggaggctgacgctgagaccaccgagggtactcccggtcaccaggac
cctgcagaacccaatgctaacaccaacaccacacagacctaccatagccacagtaatgag
agtggaactgtggcgggaggccaggcaggagagacagagactgagagagagggggggggt
gatgaggaggaaggagtgcatgggaggttaggtgggagtgacaacagtggaatcccaatc
cccgacgacggtcggccgatgagcagggacacaaacaacctggtagagaacggcacgctg
cccatcctgcggctggcccacttcttcctgctcaatgacgaggaggatgaggagcacccg
cgcggcctgaccaaagagcagattgacatactagccacgcgcacctacggccaggccagc
ctggagggggaagctgggcgcgcctgcagtgtctgtatcaacgactatgcccaagggaac
aagctgcgccgcctgccctgcgcccacgagttccacatccactgcatcgaccgctggctc
tctgagaacaacacctgccccatctgcaggcagcccatcctccctgctcaccaggactga
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