Oncorhynchus gorbuscha (pink salmon): 123991713
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Entry
123991713 CDS
T07892
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
123991713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
123991713
Transcription factors [BR:
ogo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
123991713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
123991713
NCBI-ProteinID:
XP_046149318
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Position
LG12:complement(46794656..46797056)
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AA seq
390 aa
AA seq
DB search
MSSPDAGYASDDQTQTRCAMSVMMPGMGHCQWADPLSPLGDTKVKSESCATSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHSVSDHQSTSRVCMEGLGLGYHHEHG
YQVSTQSLGHYRDTQALGGASYEPYSLPTPDTSPLDVVESDSMFFPGHSQEECHMMPAYA
YHSQGAEYTPQDPHSNQHTNHMLHRHLSSPTEQQQGHQAGPMPPSFNQLAMYYSQHCSPS
HPKRHPGHGTGQRSPLPDSHPAEPVDQMHPSELIGEVDRSEFEQYLNSSRPGDMTGLSYG
AHEANMQGPESLISSVLSDASTVFYCNYTS
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtccggatgcgggttacgccagtgacgatcagacccagacgaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctcttggg
gacaccaaagtgaagagcgagtcgtgcgctaccagctccgggaaccagaaccgtggaaag
actgagccgcggatccggcgacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aagcgcctggcacaacaaaatccggacctgcacaatgcggagttgagcaaaatgttgggg
aagtcatggaaagcccttcctgtgtccgagaagcgcccctttgtggaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccctaactacaaataccgaccccggcggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatagtgtgtccgaccac
cagagcacctcccgagtgtgtatggagggcctggggctgggttaccaccacgagcatggc
taccaggtgtcgactcagtccctcggccactaccgcgacacccaggccctcgggggggct
tcctacgaaccctacagcctgcccacccccgacacctccccactggatgtcgtggaatca
gactccatgttcttccccggccactctcaggaggagtgccacatgatgcctgcgtacgcc
taccactcccagggggcagagtacacgcctcaggaccctcactccaaccagcacaccaac
cacatgctccacagacacctctcctcccccactgagcagcagcaaggccaccaggctggc
cccatgcccccctccttcaaccaattggctatgtactacagccagcattgtagccccagt
caccccaagcgacacccaggacatgggacaggacagcgctcccctctcccagactcccac
ccagcggaaccggtggatcagatgcatccatcagagctgataggtgaggtggaccggagt
gagtttgaacagtacctgaactcctccagacctggggacatgacaggcctgtcttatggg
gcacatgaggccaacatgcagggacctgagagcctgatatcctctgtgctctctgatgcc
agcacagtgttctactgtaactacacctcctaa
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