Oncorhynchus gorbuscha (pink salmon): 123992666
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Entry
123992666 CDS
T07892
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04142
Lysosome
ogo04144
Endocytosis
ogo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123992666
04142 Lysosome
123992666
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
123992666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123992666
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
123992666
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
123992666
Exosome [BR:
ogo04147
]
Exosomal proteins
Proteins found in most exosomes
123992666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
123992666
NCBI-ProteinID:
XP_046149970
LinkDB
All DBs
Position
LG13:29273702..29299934
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgctgcaaaaaccctccagatcttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgta
gcactggtcacagacaacgccgtctaccattggagcatggagggagactctcagccagtc
aaagtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgcc
ggcttcgcccagttcaaaatggagggtaatacagaggaatccacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggc
aatcagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagt
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctagccctgcgcatggccgtacgcaacaacctggcaggg
gccgaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgag
gctgccaaggtggccgcaaatgctcccaagggtatcctgcgtaccccggacaccatccgt
aagttccagagtgtgccggcccagccgggccagacctctccactgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcctgtc
cttcagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgt
tcagaggagctgggggacctggtgaaatcagtggaccccactctggctctcagtgtctac
ctcagggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccag
aaaattgtcctctatgccaaaaaggtgggctacactccagactggatgttcctgctcagg
aatgtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggat
gaggagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctctttcctcctggatgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaacctggtccatgccccacaggtggctgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtca
gtggaggactctttggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcact
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacggga
cagatcaaagaggtggagagaatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcattgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgcttctg
ccttggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtg
ctgctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctg
tctgagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagt
gaacacagaaacctgcagaacttgctgatcctgacagccatcaaggcagaccgtacccgt
gtgatggagtacatcaaccgcctggacaactacgatgcccccgacatcgctaacatcgcc
atcagcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacc
tccgccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgct
gagcgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggt
ctggtgaaggaggcaatcgactcctacatcaaggctgatgacccctctgcctacatggag
gtgggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagacggagctcatcttcgccctggccaag
accaaccgcctggctgaattggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaac
aacgtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggcc
gccgtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccat
gctgatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggca
gagctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatg
agccacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgttgtcaccacgactcgatcacacccgcgcagtcaacttcttc
atgaagaccaagcagctgtccctggtcaagccatacctgcggtcagtgcagaatcacaac
aacaagggtgtcaatgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccattgatgcctacgacaactttgacaacatcaccctggcccagggcctg
gagaagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tatgcatcggagtcgaaagacctggagctggctgaggagttgttggcctggttcctggag
gaggacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgacgcgattaaggaaaaggtcgacaag
cttgacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggctgttcccccccag
cctggatatgggggctacggctacccagcagcacccaccggctacggccaacctccccag
cctggctttggctatggcatgtga
DBGET
integrated database retrieval system
