Oncorhynchus gorbuscha (pink salmon): 123992728
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Entry
123992728 CDS
T07892
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03420
Nucleotide excision repair
ogo03430
Mismatch repair
ogo03440
Homologous recombination
ogo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123992728
03420 Nucleotide excision repair
123992728
03430 Mismatch repair
123992728
03440 Homologous recombination
123992728
03460 Fanconi anemia pathway
123992728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
123992728
03032 DNA replication proteins [BR:
ogo03032
]
123992728
03400 DNA repair and recombination proteins [BR:
ogo03400
]
123992728
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123992728
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
123992728
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
123992728
MMR (mismatch excision repair)
123992728
DSBR (double strand breaks repair)
HR (homologous recombination)
123992728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
123992728
NCBI-ProteinID:
XP_046150143
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All DBs
Position
LG13:complement(32619731..32661852)
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AA seq
605 aa
AA seq
DB search
MLTKGAIEALTKCSNDLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLSTQLN
PMAEDNRLAPNCICQLKRSVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPQPYVEGQS
KTPQSDPNPSVHPLQPQNGIDGSMNKGPSRAFVGKKGMPPSAMPSTPGGSSKVVPIASLN
PYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSIIET
GKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADLQAR
EKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAETFDGSG
QPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMAGESLTEART
GGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVD
QQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD
SNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRK
MASAQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaagggagcgatagaggccctaaccaaatgctctaatgatttacaaaacccc
atacttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcccgctttcgt
ctgatgatgagtgatggacagcactcaatgtcttcgttcatgctctccacccagctcaac
ccaatggctgaggacaaccgactagccccaaactgtatctgtcagctgaagaggagcgtg
accaatgtcttaaaggatggacggcgtgttgtggtcatactggacatggaggtggtgaag
tctgctgatgaggtggctgggaagatcggagagccccagccttacgtggaaggtcagagt
aaaaccccacagtcagaccccaatccctcagtccaccccctgcaaccccagaatggaatt
gatggctccatgaacaaaggtcccagcagagcgtttgtggggaagaagggcatgcctccg
tctgccatgcccagcactcctgggggatcctccaaagttgtgcccatcgccagcctcaac
ccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggcatccgaacc
tggagcaactctcgtggggacggcaagctgttctctatggagattgtggatgagagtgga
gagatcagagtgactgcctttacccaggaggtggacaaattctacagcatcatcgagact
ggcaaggtgttctacatctccaagggatccctgaagattgccaacaagcagtactcatcc
ctgaagaatgactatgagatgaccctgaatggagagtccaccatcattccctgtgaagac
acccaggacgtacccatggtgcagtgcaacttcgtctccatcgccgacctgcaggcccga
gaaaaggacaccattttggatgtgattggcgtgtgcaagagcgtgtccgacgtgacccgc
ctcaacaccaagaacaaccgtgaggtctccaagaggacactcaacctgatggaccagtct
ggtaaactggtggaggtcaccctgtggggagaggaggcagagacctttgatggctctggg
cagcccatcctggccatcaaaggggccaagctgtcggactatgggggccgatctctatct
gcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctgcgg
ggctggtatgacaaggagggccactctatggctggcgagtctctgacggaggcgaggaca
ggtggaggaggaggagggaacaccaactggaagaccctggctgacatcaagacggagcac
cttggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtacatccgt
aaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggac
cagcagaatggcatgttccgctgtgagaagtgtgacaaagagttccctaacttcaagtac
cgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgcttt
caggagagtgctgaagccattttgggacagaacgctgcttacctagggcagctcaaggac
tcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttcgttttc
cgtaacagagtcaagctggagacctacaatgatgagtcccggatcaaggccacggtgatg
gaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatcaggaag
atggcttccgcccaataa
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