Oncorhynchus gorbuscha (pink salmon): 123992805
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Entry
123992805 CDS
T07892
Name
(RefSeq) scavenger receptor class F member 1-like isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123992805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123992805
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Phagocytosis
Scavenger receptors
123992805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
Motif
Other DBs
NCBI-GeneID:
123992805
NCBI-ProteinID:
XP_046150285
LinkDB
All DBs
Position
LG13:complement(35896479..35903467)
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AA seq
956 aa
AA seq
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MGQFLTGLGLLLCCSLSSPQRLAPSGRNVCQDPRNPSTLVCCTGWRQQREECTLPVCDGE
QACQQDEVCLYPGVCRCRPGYYGAHCKTRCPPEFWAPDCRELCKCHPHGRCDPITGKCTC
LSNRWGALCQNTCKCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRCQ
CALGYWGQKCSLRCSCYISSCQQKTGACECQNGWWGPTCDRRCNCDLEHSECNAVSGECV
CQPGYKGAFCNEPCGPGEYGSGCKLSCGHCEGGQSCSVVDGVCTACEPGWNGTHCDRLCP
HGYHGNHCQEACPRCRNGEPCEPRTGACSRCDPGWTKPRCDEPCSNSTFGDACRSLCSPC
FHGHCDHVTGSCVCGPGFQGRSCNITCPDQLYGFNCSSLCDCGEGTACHPATGACPYSGH
RALITGLLVPLLLVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSFFDSDEETREVLYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSISAEDMSLPFGIPRTSSNAKSKCPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKHKSPWGVLMLSALQAQGGNASEGEEMEGGVDGCG
GGTGPLEDPESSGEAGDPDVDRWTATPTRAMSTLQVPGAVVGRTISNAAVSRKGGQTPGS
TSDGQQAEMDKVTTVYVTVGKAGVGRPLSKLELPSLEGPVQAMLRRLGSLQRHKDQEVGT
KPKGKSPGVEGITKPPRRKLGTRVSVWEQGAPPPSEVEGAVGEGVSMRKPSRRKQHAHHS
SPAVMGNTDAGTNTQPPPEDTPATVTSTRPLSSILKSVPEVGGSEVRGERSGVRRENGDP
GMQTDNGYRTIGPAGFVMDAVSLSEVIANEGVVAGVDDGPNLYENVMIMHSSFQMQ
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggccagtttctgacgggtctaggactactgctctgctgttccctctcctcccctcag
agactggctccctcagggagaaacgtctgccaggaccccaggaatccttccactcttgtc
tgttgcactggatggagacaacagagagaggagtgtacccttcctgtgtgtgatggtgaa
caggcctgccagcaggatgaggtgtgtttatacccgggcgtctgtcgctgtcgccctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagctgtgcaagtgccaccctcacgggcgctgtgacccgatcacgggcaagtgtacgtgc
ctctccaaccgctggggggcactctgccagaacacctgcaaatgtggccgtcatggacac
tgccaccccgtacacggcaactgcacctgcgacgagggctggtggacacccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgccctgggttactggggtcagaagtgcagtcttcgatgtagctgctacatatcatcc
tgccaacagaagacgggggcatgtgaatgccagaacgggtggtggggtccgacgtgtgac
cgccgctgtaactgtgacctggagcacagcgagtgtaatgccgtcagcggggagtgtgta
tgtcagcctgggtacaagggagccttctgtaacgaaccgtgtggacctggggagtatggc
agtggctgtaaactgagctgtggccactgtgaaggaggccagtcgtgctctgtggttgat
ggtgtctgtacggcctgtgagcctgggtggaatggcacacactgtgaccgtctgtgcccg
catggttaccatggaaaccactgccaggaggcatgcccacgctgcaggaacggtgaacca
tgtgaacccaggacgggggcgtgttcacgatgtgacccaggatggaccaaacccaggtgt
gacgagccgtgctctaacagtacattcggggatgcctgccgctccctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcctgggttccaggga
cggagttgtaacatcacctgtccagatcagctgtatggctttaactgttcctctctctgt
gactgtggagagggaaccgcctgtcacccagcaacgggggcgtgtccatacagtggtcac
agggctctgatcactggtctcctggtccctctgctcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagggtagcagtgggtgacggt
ggtacctctgtccgtatgaagcatcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcacaccacgac
cctgagctgacgttcaaccacagcttcatagagcctccctcgtcaggctgggtgacggag
ggatccttcttcgacagtgatgaggagaccagagaggtgctctactgtgtcccccccaga
gaagacatccctgcagtggcgggcggtgagttccaggagttccagcacgagatgagttct
aagtgtaacatgttccccgacccctctgccttcagtattagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaacgccaagtccaaatgcccctccgtctccttc
gccgaaggcaccaggttcagtcccaaggagcgccgaggctctgcccaagatttgacaccc
ggggccccccgcaccaaacacaagtccccctggggggtcctgatgctgtcagccctccag
gcccagggagggaatgcctcagagggggaagagatggaggggggggtggatgggtgtgga
ggtgggactggaccattggaagatccagaatccagtggtgaagcaggggaccccgatgtg
gacaggtggacagctaccccgacccgagccatgtctaccctgcaggtgcctggagcagtg
gtaggacgcaccatatccaacgctgctgtttccagaaagggagggcaaacaccagggtcc
acatccgatggccagcaggcagagatggacaaagtgaccacagtgtatgtgacagtgggg
aaggcgggggtggggaggcccctgtctaaactagagctccccagcttggagggcccggta
caggccatgctacgcaggctaggtagcctccagaggcacaaagaccaggaggtgggaact
aagcccaaggggaagagcccgggggtggaggggatcaccaagccccccaggaggaagctg
gggactagggtcagtgtgtgggagcagggggctcccccaccctcggaggtggagggtgct
gtaggggaaggtgtatctatgagaaaacccagtaggaggaaacagcacgcccaccatagc
tcccctgctgtcatgggaaacactgacgctggcactaacactcaacccccaccagaggac
acccctgccaccgttacgtccacgaggcccctgtcctccattttgaaaagcgtgccagag
gtcggtgggtcagaggttaggggtgaaaggtcaggggtaaggcgagagaacggcgaccct
gggatgcagactgataatggatatcgaacaatcgggccagctggatttgtaatggacgct
gttagtctgagtgaagtcatcgccaatgaaggagtggtggctggtgtggacgatggacct
aacctttatgagaacgtgatgattatgcattcctcatttcagatgcaatga
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