Oncorhynchus gorbuscha (pink salmon): 123992906
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Entry
123992906 CDS
T07892
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
ogo04140
Autophagy - animal
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
123992906
04137 Mitophagy - animal
123992906
04148 Efferocytosis
123992906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
123992906
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
123992906
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GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
123992906
NCBI-ProteinID:
XP_046150484
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All DBs
Position
LG13:complement(42037862..42066071)
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AA seq
627 aa
AA seq
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MDTKEEPVGKRSSTDQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSGDTSEERVTDGDEDTVDGFYPRALAGFILVMTEEGDMIYLGDSVSKH
LGIPQLELLGQSVYDFVHPCDQEELRDLLAPRPGLSKKKPAQQHTEINFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTFL
TRHSMDLCFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKS
DPVSEASEETVCDSDNSSSAELSLQLKENPEDLLQLAPVSGDPIVPLTDIAEPSFSLPSS
SDSAPDFPQELCTPELWTLLSPIFSKLTSSAPALIPIEELPIEDEVAKLFAVCPDESVQK
RNQPEDMEVVDLDMLAPYISMDDDFLLSVQLPETPDSPSPEPPTATRKRSHEQDEDMPSQ
LMSQDKRPRHLVSPIQHKLLLSYALLDCLEDVDNPELELGPIPHRRSQLLTDRDPILGEA
QGLCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaagagcctgttggaaaacggtcaagtacagatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtctggagacggagctgttctacaagttggcc
cacaccctgcccctaccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcaggggacacgagtgaggagcgc
gtcacagatggggacgaggacacggtggatgggttctacccccgggcgctggcaggtttc
atcctggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcaaacac
ctgggcatcccacagctggagttgctgggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggatctcctggcgcctaggccaggtttgtccaagaagaaacca
gcgcagcaacacacagagattaacttcttccttaggatgaagagcactctgactagtaga
gggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgtgtgtgctgcagtggcgaggattcatcacctcctgcaggcagcttcatgacagtgctg
tgtgagcccattccccatccgtctagtgtggagttccccctggaccggagcacattcctc
actcgacacagcatggacctgtgcttcacacactgcgatggcagggtgtctgagctagta
ggatacgagccagaagatctgattggcaaatctgcctacaaattccatcatgccctggac
tcagatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcctggctaagagtggaggctttgtgtgggcagagacccaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagt
gtggtggagcaggcggatgtggtgttctcagtagagcagactggctgtgggctgaagagt
gatcctgtctctgaggcctccgaggagaccgtgtgtgacagtgacaacagcagcagtgca
gagctctccctccagctgaaggagaacccagaggacctcctccaactggcccctgtctca
ggagaccccatcgtacccctcacagacattgcggagccgtcgttcagtcttccatcaagc
tctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggacgctcctc
tcacccatattcagcaagctcacctcatcagcaccagctctgatccccattgaggagctg
ccaatagaggacgaggtggcgaagttgtttgctgtttgtccagatgagagcgtacagaag
agaaaccagcctgaggacatggaagtggttgatctggacatgctggctccgtatatctcc
atggatgatgatttcctgctcagcgtccagctccctgagacccctgacagcccctcccca
gagccccccactgctaccaggaaacgaagtcatgagcaggatgaagacatgccctcccag
ctgatgagtcaggacaagagaccgagacacttggtgtcccccatccagcacaaactgctt
ctcagctatgccctgctggactgcctggaggatgtagacaacccagagttggagctgggg
ccaatcccccacaggcggagccaactgctgacggacagagaccccatcctcggtgaagcc
cagggactatgtgacactgcagccctgatgagggacctcttcttgtcccgcccacctgac
cccctgacctcctctctgacttga
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