Oncorhynchus gorbuscha (pink salmon): 123992995
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Entry
123992995 CDS
T07892
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123992995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
123992995
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123992995
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123992995
RNA polymerase I system
123992995
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
123992995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
123992995
NCBI-ProteinID:
XP_046150672
LinkDB
All DBs
Position
LG13:45773478..45799895
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEYDEEEE
EDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHVVLDE
DNSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTETPLQIKSVVAPEHVKGYIYVESYKQTHVKAA
IDGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPTQRLFDAEKIRSLGGDVSHDGDF
MIFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHPGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYI
GVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTG
SRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDYEFGYD
DEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGS
YQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPG
GYNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGIIRSVTGGMCSVFLQDTEK
VVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GKLEL
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggacaaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaggcagcagaagaggagggggaagacttggcagatgaggagtatgacgaagaggaggaa
gaggacgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttggatgaa
gccgatgtggacgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggatatt
ttggagaaagttaacgaggaagctgaggtgtccaacattgaccatgtggtcctggatgag
gataactctggctcccgcaggctgcagaacctctggagagattccagagaggaggccttg
ggggaatattacatgaggaaatatgccaagcaatctggaaatgattttcccgggggttct
gaggaactgtctgatgacatcacccagcagcagctgctccctggtgtcaaggatcctaat
ctttggacagtcaagtgtaagattggggaagagagggcaactgccattgcgttgatgagg
aaattcattgcctatcaattcacagaaacgcccctccaaatcaagtcggtagtggctccc
gaacatgtcaaaggttacatctatgtagagtcgtacaagcagactcacgtcaaagctgca
attgacggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaag
gagatgacagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcctgg
gtccgactcaagagaggcctatacaaagatgacatcgcccaggtggactatgtggagccc
agtcaaaacacgatatcactgaagatgattcccaggatagatttggacagaatcaaggcc
cggatgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccaacccagaga
ctcttcgatgcagaaaaaatcaggtcacttggtggggatgtcagccatgatggagacttc
atgatatttgaagctaaccgctacagccgcaaagggttcctcttcaaaagctttgccatg
tctgctgtgatcaccgaaggagtgaaacccactctgtcggagctggagaagtttgaggac
cagccagaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgagcac
aacctccaggccggggacaatgtggaggtgtgtgaaggggagctgatcaacttgcagggc
aaaatcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctcaag
gatcctctggagttcccggcccacgagttgaggaagtacttccgtatgggtgaccacgtc
aaggtgatagcaggccgctacgagggcgacaccggcctcatcgtacgtgtggaggagaac
tttgtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgcccagggacttg
cagctgtgctctgagacggcatcaggggtagatgccgggggccaacacgagtggggggag
ctggtccaactggacccccagaccgtgggagttattgtcaggctggagagggagacattc
caggtcctcaacatgcatggcaaggtgctgacagtgcgtcaccaggcagtgaatcgacgg
aaagacaaccgctttgccgtggccctggactctgagcagaacaatatccacgtcaaagac
attgtcaaggtcatcgacgggccacactcggggcgtgaaggggagatccgccacattttc
cgaggctttgccttcttgcactgcaagaagctggtggagaacgggggcatgtttgtctgc
aagacacgccacgtggtgttggccgggggctccaagccccgagatgtcaccaacttcact
gtgggaggcttcgcgcctatgagtccacgcatcagcagccctatgcatccaggtggtggt
ggccagcagcagaggggcggtggaggtggaggacagatggggcgtggccggggcaggagg
gacaacgacctgattggacagaccgtccgcatctcccagggaccatacaaggggtatatt
ggagtggtgaaggacgccacagagtcgacagccagagtggaactgcactcgacatgccag
accatctctgtggaccgacagcgtctcaccacaatgggagccaagaggcatggaggaatg
acttccacccacggacgcacccccatgtacggttcccagacacccatgtacgggacaggc
tcccgtacccctatgtacggctctcagacccccttacacgatgggagccgtactcctcac
tacggctcgcagacgccgctgcatgatgggagcaggacgccggggcagagcggagcgtgg
gaccccaacaaccccaacacaccgtccagggcggatgacgactatgagtttggttatgat
gacgagccctccccgtcccctcagggctacgggggcacgcctaacccccagacccccggc
tacccagaggtgccgtcaccccaggtcaacccccagtacaacccccagacaccaggcacc
ccagccatgtacaacacagaacagtactcgccgtacgctgccccctccccacaaggctcg
taccagcccagccccagtcctcagagttaccatcaggtggcacccagcccagtgggctac
cagaacacacactcacctgccagctaccaccccaccccctcacccatggcatatcaggcg
agtccgagccccagcccggtaggctacagccccatgacccccggcgccccctccccgggc
ggctacaatccccacacccccggctccaacatcgaccagacctcttgcgactgggtcacc
accgacatcctggtgcgcgttaaagacaccttcctggacagccaggtggttaaccagaca
ggcatcattcgcagtgtcacgggtggcatgtgctccgtcttcctccaggacacagagaaa
gtggtgagcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaaggtg
aaggtgattctaggggaggaccgcgaggccacggggatcctactgagtatcgacggggac
gacggcatcgtaaggatggagctggatgaccagctgaagattctcaacctccgcttcctt
ggcaagctggagctctga
DBGET
integrated database retrieval system
