Oncorhynchus gorbuscha (pink salmon): 123993167
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Entry
123993167 CDS
T07892
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04136
Autophagy - other
ogo04140
Autophagy - animal
ogo04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
123993167 (atg16l1)
04136 Autophagy - other
123993167 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
123993167 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123993167 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ogo03029
]
123993167 (atg16l1)
Membrane trafficking [BR:
ogo04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
123993167 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
123993167 (atg16l1)
Mitochondrial biogenesis [BR:
ogo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
123993167 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_NWD2_C
eIF2A
Beta-prop_IFT140_1st
WD40_RFWD3
ADIP
DUF4200
Beta-prop_HPS5
CCDC22_CC
CCDC93_CC
Beta-prop_SPT8
Beta-prop_DCAF12
NET2A
STX6_10_61_N
Uso1_p115_C
CENP-F_leu_zip
DUF7310
Lipoprotein_6
Mis12
Motif
Other DBs
NCBI-GeneID:
123993167
NCBI-ProteinID:
XP_046150978
LinkDB
All DBs
Position
LG13:complement(54112003..54158885)
Genome browser
AA seq
621 aa
AA seq
DB search
MAERRVECSWKRHVGEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQAVLSERYQSDKYDF
QNRHDCSPGADSSRSDNLQQEMAQMRIRHQEELTELHKKRGELAQSVIELNHQIQQKDKE
IQHNEAKMQEYQRQIAELEGECRELRGQLQDLEQANQTLKDEYDALQITFGALEEKLRRT
TDDNQELVSRWMAEKSQEANKLNAENEKDCKRRQAKLQKELADAAKEPLPMDPDDDIEVL
AEDSGKGTREASPNRPLSRTPSKRISGQPLQSGLLDSISNIFGVSESVHPGLLPPDSRRR
PGNSYGTSPENTETTSGVCADVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRV
KLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTG
HSGKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGH
FDKKVRFWDIRAESIVCELELLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRSNAVRQTF
SAQGFKCGADWTRVTFSPDGSYVAGGSADGALYVWNVLTGKLERTLDKNHCSAINSVSWS
PSGAYVVSVEKGSKAVLWSDM
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacgtcgtgtggagtgttcatggaagaggcacgtcggagagcagctgaagcag
agggaccgtgtgcagaggcaggccttcgaggagatcatccaccaatataaccgtctcttg
gagaagtccgatctacaggctgttctttcagagagataccagtcggacaaatatgacttt
cagaacagacatgactgcagcccgggggcagactcgagtcgcagcgacaacctacagcag
gagatggcccagatgcgaatcaggcaccaggaggagctgacagagcttcataagaaaagg
ggcgagctggcccagagtgtgattgagctgaaccaccagattcagcagaaggacaaggag
attcagcacaatgaggccaagatgcaggagtaccagcggcagattgccgagctggaggga
gagtgccgggagctgcgtggacagctgcaggatctggagcaggctaaccagacgctgaag
gatgagtacgacgccctgcagatcaccttcggtgccctggaggagaagctgcggcgcacc
accgatgacaaccaggagttggtgtcgcgctggatggctgagaaatcccaagaggccaac
aagctcaatgcggaaaatgagaaagactgcaagcgcagacaagccaagcttcagaaggag
cttgcagacgctgcaaaggagcccctgcccatggacccggacgacgacatcgaggttcta
gctgaggattctgggaaaggcactagagaggcctctcccaaccggccgctcagccgcacc
cccagtaaacgtatctccggacagcctcttcaaagcggcctgttggactcaatctccaac
atatttggcgtatctgagtctgtgcatcccggactccttcctccagactccaggcgtcgt
cctgggaactcgtacggaacatcacctgaaaacacggagactacctccggagtgtgtgcc
gatgtccgcgttccctccactgccctccatgtatttgaagcccatgatggggaagtgaat
gcggtgcggttcagcccaggctcccgactcctggccaccggagggatggaccgcagggtc
aaactgtgggaagtggtctcaggtcgctgtgagcctaagggtgctctgactggcagcaac
gccgggatcaccagtatagagtttgacagtgctggctcctacttgctggctgcatccaat
gactttgccagtaggatctggactgtggatgactacagactgaggcacacgctgacaggc
cacagcgggaaggtgctggcggctcgctttctcctggacaacgctcgtatcgtctccggg
agctacgacaggactctgaaactgtgggacctgcgcagcaaagtctgcatgaagactgtg
tttgctgggtccagctgtaatgacatagtttgcacagagcagtgtgtcatgagcggccat
tttgataagaaagtgcggttctgggacatcagagcggagagtatagtttgcgagctggag
ctcctgggccgagtcacgtctcttgacctgaaccacgaccgcaccgagctgctcacctgc
tcccgggacgacctggttaagatcatcgacctgcgcagtaacgcggtccgccagaccttc
agtgctcagggcttcaagtgtggcgctgactggacccgagtcaccttcagtcctgatggc
agttatgtggcggggggctctgcagacggcgccttgtatgtgtggaatgtcctgacgggc
aagttggagcgcaccctggacaagaaccactgctcggccatcaactctgtgtcctggtcg
ccatcgggagcctacgtggtcagtgtggagaagggcagcaaggccgtcctctggtctgat
atgtga
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integrated database retrieval system
