Oncorhynchus gorbuscha (pink salmon): 123993242
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Entry
123993242 CDS
T07892
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
123993242
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123993242
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
123993242
NCBI-ProteinID:
XP_046151116
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All DBs
Position
LG13:complement(60741334..60949664)
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AA seq
444 aa
AA seq
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MDSTEDNGESKAALRPCAPRSLLLRCLVGFPTVVCFMLSLSSIAICLLMSFKTYQLENRL
DALELEKNTVFNPPESAFTREDGTVLPALRSSIETLLQERLSEVMPKLRTARDVPQECSC
PPGPPGKRGRMGRRGDPGAPGKTGRDGYPGPLGMDGKPGLPGPKGSQGPVGLKGDKGDQG
DIGPRMVFPRYDHGFMSGDQSNFQRRLMKGDQGSPGPRGPPGNTGKDGPRGPAGEQGFPG
LDGVEGQAGVPGKPGEDGEPGYPGPQGPPGSKGEAGLLGEKGERGMDGLPGFKGDKGDIG
EQGTQGDLGYPGEKGVPGSTEVIDFNGKLLEAFQAIQTISVGGPPGLPGPPGPPGGKGEL
GLPGTSGLDGEKGDMGETGSIGEKGEKGEMGLSGPGGRDGQKGDKGDSRLEDNLVQMISQ
PGPPGPPGPPWTYRVHGPSWNAWP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggattcaacggaggataacggggagagcaaggcagcactccgtccatgcgcgcccagg
tctcttctcctgcgctgtctggtcggtttccctacggtggtgtgtttcatgttgtccctg
agctccatagccatctgcctgctcatgagcttcaagacttaccaactggagaaccgactg
gatgccctggagttggagaaaaacacagtgtttaaccctccggagagcgccttcacgcgc
gaggatgggactgtactaccggcactaaggagttctatcgagacgctcctgcaagagaga
ctgagtgaagtgatgcctaaactgcgcacggcaagggacgtcccccaagagtgttcctgc
ccaccaggtcctcctggaaagcgtggaaggatgggaagaagaggtgatcccggagctcca
ggcaagactgggagagatggatacccgggcccgctcggcatggatggcaaaccaggtctc
ccaggtcctaaaggaagtcagggaccagtgggactcaagggagataagggtgaccaggga
gacattgggcccaggatggtctttccccgctatgaccacggctttatgtctggtgaccag
tccaactttcagagacgcttgatgaagggtgaccaagggtccccgggccccagaggccct
cctgggaacacaggcaaggacgggccccgcggccccgctggagaacagggtttccctggt
ctcgatggtgtggagggacaagcaggtgtacctggaaagccgggtgaagatggcgagcca
ggatacccagggccacagggacccccagggtcaaagggggaggctggtttgctgggagag
aagggggagaggggcatggacggactcccagggtttaagggagacaaaggagatatcgga
gagcaaggcacccagggagacttgggttatcctggtgaaaagggggttcctggctctact
gaggtcattgacttcaatgggaagctactagaagccttccaggccatccagaccatcagt
gtcgggggcccaccagggttaccggggcccccaggacccccaggaggaaagggagagcta
ggcttgcctgggacatctggactagatggggagaagggagatatgggggagacggggtcg
atcggagagaaaggagagaaaggagagatgggtctctctgggccaggggggagggatgga
cagaagggggacaagggagactccaggctggaagataacctggttcagatgatttctcag
ccaggccctcccggccccccgggacccccctggacctacagggtacatgggccatcatgg
aacgcctggccctaa
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