Oncorhynchus gorbuscha (pink salmon): 123993327
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Entry
123993327 CDS
T07892
Symbol
cstf2
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2
KO
K14407
cleavage stimulation factor subunit 2
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123993327 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123993327 (cstf2)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123993327 (cstf2)
U7-dependent histone pre-mRNA processing factors
123993327 (cstf2)
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
123993327
NCBI-ProteinID:
XP_046151309
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Position
LG13:64804972..64827640
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AA seq
560 aa
AA seq
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MANLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDNIIPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFALL
QAQVVMRIVDPEIALKMLHRQTPVQPLVPNGPVPVANQPIPPPNAPVSQSQPMPGMHMNG
APQMMQPPPIGGGPGPMPGQGLVGPPGGIQPPIGIPQGGPVPIDRGQGNLQHSPVGSSGQ
AAIERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVIEPSRGGAFIGAPPPHQGPPMHM
NQMVGGPPSDMRPPHDMRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMG
EPRGPPLGEPRGMMGEPRGPPMMEPRGPPMETRGRDPRAVDTRGPVSGQRVPMAQGMQGP
PPHSMNPNAPPTARPGPGLPQSGGSFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPP
EQRQSILILKEQIQKTAGAP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttagcagctgctgttgttgctgccgctggtagagatcccgctgttgaccgt
tcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactgaaa
gacattttttcagaagtcgggcttgttgtcagctttaggttagtgtacgatagggagaca
ggcaagccaaaaggatatggcttctgtgagtatcaagaccaggagaccgccctcagtgcc
atgcggaacctgaacggaagagagttcagtggccgagctctccgtgtcgacaatgctgcg
agtgagaagaataaagaagagctcaagagtttggggacaggggcccctatcattgagtct
ccctacggggacaacataataccagatgaggctccagagtctataagcagagctgtggcc
agtctgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaaaac
agtccccaggaggcaaggaacatgctgttgcagaacccccagctggcctttgccctgctc
caggcccaggtggtcatgaggatcgtagaccctgagatcgccttgaaaatgcttcaccgt
caaaccccagtgcagccattggttcccaatggaccagtgccagtggccaaccagcctatt
ccaccgcccaacgctccagtctcccagtcacagccaatgccgggcatgcacatgaacgga
gccccccagatgatgcagccccctccaataggtggaggacctgggcccatgccagggcag
ggactagtgggaccaccaggtgggatacagccaccgataggaatacctcagggaggtccc
gttcctatcgataggggacaaggaaacctccagcactctcccgtaggatcgtctgggcaa
gctgctatcgagcggcctcaaggaccaggcggtatcccccccagaggcctgcttggcgac
ggccccaacgacccccgaggaggaaccctgctctcagtcacaggagaggtcatcgaaccc
agtcggggaggagccttcattggcgcccccccaccacaccaggggccccccatgcacatg
aaccaaatggttggcgggcctccttcggacatgaggccacctcacgacatgagaggaccc
cccatgggtgaacccaggggcatgatgggagagccccggggaccccccatgggtgaaccc
aggggcatgatgggagagccccggggaccccccatgggtgaacccaggggcatgatggga
gagccccggggacccccgttgggtgagcccaggggcatgatgggagagccccggggacca
cccatgatggagcccaggggaccccccatggagacgagaggtcgtgaccccagagcggtg
gacacccgtggaccagtgtcaggccagagggttcccatggcccaaggaatgcagggcccc
ccccctcactccatgaatcctaatgcccctccaactgccagaccgggtcctggtttacca
cagtctggaggtagcttcagcccagggcaaagccaggtgacctcacaggaccatgagaag
gccgccttgatcatgcaggtgctgcagctgaccccagaacagattgccatgctgccccca
gagcagagacagagcatcctcatcctcaaagagcagatccagaagactgccggggcgccc
taa
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