Oncorhynchus gorbuscha (pink salmon): 123993423
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Entry
123993423 CDS
T07892
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
123993423 (ssrp1a)
03036 Chromosome and associated proteins [BR:
ogo03036
]
123993423 (ssrp1a)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
123993423 (ssrp1a)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
123993423 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
POB3_N
SSrecog
HMG_box
HMG_box_2
SSRP1_C
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
123993423
NCBI-ProteinID:
XP_046151507
LinkDB
All DBs
Position
LG13:complement(69285722..69310504)
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AA seq
708 aa
AA seq
DB search
MGDTLEFNEIYHESKGSWNDGRLRFSKQNVVYKSSKTGKVDNIPAAELSVATWRRVCLGY
GIKLATSNGHVYKYDGFRDTDYERISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDSSVFEIPLASVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGPADEGADPVE
AFAQNVRSKADVIQATGDAVCVFKELQCLTPRGRYDILIYPAFLHLHGKTFDYKIPYTTV
LRLFLLPSKDQRQMFFVISLDPPIKQGQTRYHFLILHFSKEEELKLTLNMSEEEVEKRYE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGNTPGAQCITCSYKAQSGLLYPLERG
FIYVHKPPVHLRFEEISSVNFARGTTTTRSFDFEVETKQGNQFTFSSIEREEYGKLFDFV
NAKKLHIKNRGFKEKKAKNNEYSDSDDDQHDAYLERMKAEGKIREEGDGSNDSDEETDES
FNPGEESDVAEEYDSNASESDSGSGGDGSGDEGKKKPAKKAKVVKEKRERKPRKEKKQKD
TNAPKRPMSSYMLWLNSSRERIKSENPGISITEISKKAGEMWKQIGKEDKEEWDGKAEEA
KKTYEKAMKEYRESGGGSSTPAKKESKKKAGGKEDKKRKSGGGEKEKEQGGNDSFKSREF
ISSEESSSDGERKKAKKAKGKPQSRDKESEEEEVEAMTTPPSSEDDSD
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgagatctaccatgaatccaaggggtcctggaacgac
ggtcgtctgcggttcagtaagcagaatgtggtgtataagagcagtaagaccgggaaggtg
gacaacatcccggcagcagagctgtctgtggccacatggaggcgtgtgtgtctgggatac
ggcatcaaactggcaaccagcaacggccatgtctacaaatacgacggcttcagagacacg
gattatgagaggatctctgagttcttcaaggccaactacaaggtagagctgacagagaag
gacatgtgcgtgaaaggctggaactggggcactgctaaattctctggtccattgttgtcg
tttgacgtgaatgacagctccgtgtttgagatccccctggccagcgtgtcccagtgtgcc
accgggaagaacgaggtgacgctggagttccaccagaacgatgacgctgaggtctctctc
atggaggtccgtttctacgtcccccccggccccgcagacgagggggcagaccccgtggag
gcgtttgcccagaacgtgcggtcgaaggcagatgtgatccaggctacaggagatgctgtg
tgtgtcttcaaagagctgcagtgcctcacacccaggggcaggtatgatatcctcatctac
cctgccttcctgcacctccatggtaagacgtttgactacaagatcccctacaccaccgtg
ctgcgtctcttcctgctaccaagcaaggaccagagacagatgttcttcgttatcagtctg
gacccgcccattaagcaaggacagacgcgttaccacttcctcatcctacacttctctaag
gaggaggagctcaagcttaccctcaacatgagcgaggaggaggtggagaagcgttatgaa
gggaagctcagcaagaacatgtcaggttctctctatgagatggtcagcagggtgatgaag
gctctggtcaacaggaagatcactgtgcccggaaacttccagggtaacacccctggggcc
cagtgtataacatgttcctacaaggctcagtccggcctgctctacccgctggagcggggc
ttcatctacgtccacaagcccccagttcacctgcgcttcgaggagatctccagtgtcaac
ttcgccagaggcaccaccaccacgcgctccttcgacttcgaggtggagaccaagcagggg
aaccagttcaccttcagcagcatcgagagggaagagtacgggaagctgtttgactttgtc
aacgccaagaaactccacatcaagaaccgaggattcaaggagaagaaggctaagaacaac
gagtacagtgactcagacgacgatcagcacgatgcctacctggagaggatgaaagccgag
ggcaagatcagagaggagggagacggcagcaacgactcagacgaagagaccgatgagtct
ttcaaccctggagaggagagtgatgtcgctgaggagtatgacagtaacgcgtcggagagc
gacagcggcagcgggggggatggcagcggtgatgagggaaagaagaaacctgcaaagaag
gccaaagtcgtgaaagagaagagggagaggaaaccacgcaaagagaagaagcagaaggac
acgaacgcccccaagaggccgatgagttcctacatgctgtggctcaactccagccgcgag
cgcatcaagtctgaaaaccccggaatctccatcacagagatctccaagaaggcaggagag
atgtggaaacagatcgggaaggaggacaaagaggaatgggacgggaaggcagaggaggct
aaaaagacctatgagaaagccatgaaggaatacagagagagtggtggaggctcctccaca
ccagctaagaaggagagcaagaagaaggcgggaggcaaggaggacaagaagaggaagtct
ggtggaggagagaaagaaaaggagcaaggaggaaacgacagctttaagagccgagagttt
atctccagcgaggagagttcatctgacggtgaacgcaagaaggccaagaaggccaaaggc
aaaccccagagcagggacaaggagtctgaggaggaagaagtggaagcaatgaccacaccc
cccagctctgaagatgactctgactga
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