Oncorhynchus gorbuscha (pink salmon): 123993448
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Entry
123993448 CDS
T07892
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo02010
ABC transporters
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
123993448
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123993448
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ogo02000
]
123993448
Transporters [BR:
ogo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
123993448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
123993448
NCBI-ProteinID:
XP_046151566
LinkDB
All DBs
Position
LG13:complement(70123434..70166095)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVRQIIEADVNLE
KVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESHFLHNL
DFLKPIRKDVRTDPEAVQQVAKATDKLLESLGSLALELASVKSWRDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAYDNTSTP
YCNAMMRSMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRELG
GMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSKLAGSEWTVEDVSNFLTKHSQD
THPHGTAVTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAITMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGENRKTDFSQNKRRNCEAVCIEEEPS
HLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPFLSSCHNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICESAFVP
PDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDNHLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDADPESRETDFLSGSDGKGSYKVTGWSLKRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQRLLSA
LTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPACACSC
DGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLKNKIWV
NEFRYGGFSLGARSTNVLPAADEIDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRSNLPPGKDPSKFGIRAFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVMDTIPL
SSRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgttgttgtggaagaactttacctacaggagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgaatgtcatttccccaacaaggcc
atgccctcggcgggcaccctgccctggatccaaggcatcatctgcaatgccaacaacccc
tgcttccgcaaccccactcctggagagtcccccggggtcgtgggcaacttcaacgagtcc
ataatctctcgtctgttctccgatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggatggctttaaaggcctcatccaagccctgaagaccctacaggccaacaccaaa
ggattcaagctgaaggatttcctccacaacaatgagaccctgtccactttccttctgcga
aacgcttccttctcggaacacgccgtgcgccagatcattgaggccgacgtgaacttggaa
aaggtgctggtcaaaggcttcggtgtccacctgagggacttgtgcagcagcaacggcacc
agagtagaggactttgtgaccatcacagacagcaaggtgtccagtctggtccagaagatg
ctctgcgtgtccccaggctcctggctcaaccaggcagaaagccacttcctccacaacctg
gacttcctcaaacccatacggaaagatgtgaggactgaccctgaagccgtccagcaggtg
gccaaggctacagacaaactcctggagagcctgggctccctggccttggagctggccagc
gtgaagagttggagagacctgcgtaacgagatcatcttcctcacggagaacgccacctcc
tcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggccatcccgagggtggc
ggactaaagatcaagtccctcaactggtacgaggacaacaactacaaggctctgttcggc
aaccacaacacaaccaacggagaggagcccatctctgcctacgacaacacatccactcca
tactgtaacgctatgatgaggagcatggagtccagccccgtgtccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccccgacaccccggccacacag
aagatcatccacgaggtgaacagaacattccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaaattaagcccaaggtctggaccttcatggagagcagcgaacacatg
gacctagtaaggaccctattgaagaacaatggcactggcagcttcttcacctccaaactg
gcgggctcagagtggactgtggaggacgtctccaacttcctgaccaaacattcgcaggac
acgcatccccacggtacagccgtcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcgctcctggacgataggaagttctgggcg
gggattgtgtttccagatattgaggccaacagctctgaactgccggccaacgtcaactac
aagatccgcatggacatcgataacgtggagcgcaccaacaagatcaaagacggatattgg
gaccctggtcctcgtgctgacccatttgaggacctgcgctacatctggggtggcttctct
tacctccaggacatcatcgagcatagcatcatcaccgcagtaactggcgtcaaggagaag
acgggagtctacatccaacagatgccctatccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtgtacgagaaggaggcaaggctcaaggagaccatgaggatcatg
ggattggacaatggcatcctgtggttcagctggttcatcagcagcctcatccccctgcta
atttctgccggcctgctggttgtgctgctcaagatggggaacctgctgccctacagtgac
cccggcgtcatcttcctgttcctgggttcctttgccgtggtaaccatcatgcagtgcttc
ctcatcagcacaatgtttgcccgtgccaacttggcggcggcatgcgggggcatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactatgtgggctttggg
gccaaaatagtcgctagcctgctgtccccagtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccagtggaacaacctgttcaatagccccatg
gaggaggacgacttcagcctgaccaccgccatcaccatgatgtacttcgactccttcctc
tacatggtgatgacctggtacatcgagtcagtcttccctggtcagtatggtattcccagg
ccctggtacttcctcttctccaagtcctactggtttggagaaggggaaaacaggaagact
gacttcagtcagaacaagagaaggaactgtgaagctgtctgtatagaggaagagccatcc
cacctgaaaactggtgtcttcatagagaacctagtcaaggtgtaccggcacgggaagaag
ctggctgtggatgggctgactctgggcttctacgaaggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccactatgtcaattctaacgggactgtttccgcctacc
tctggcactgcttacatcatgggaaaagacatccgatcggagctgagtgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgttgaggagcac
atctggttctatgctcgtctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagacactggcctgccgcacaaacgcacttccaggaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgttggggggtcaaaggttgtg
attctggacgagcccactgccggggtcgacccctacgcccgcaggggcatctgggacctc
ttgctccaatatcgtctaggtcgtaccatcatcctctccacccaccacatggacgaggcg
gacatcttgggcgaccgcattgccatcatctcccacggcaagctgtgctgcgtgggctcc
tccctcttcctgaagaaccagctgggtacaggctactacctcaccctggtcaagaagggc
ccagaacctttcctcagctcctgccacaactcctccagtaccgtctccttaactaagaag
gaggaggattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagtagctaccatagaaactgctcaggcagcttccatctgtgaaagtgccttcgtgccc
cccgacgtctccctgatctccagcctgatcttcaagcacgtcccggccgcccgcatggtg
gaaaaccttggccacgagctcatctacgtcctaccctacggcgccgccaaggacggagcc
ttcgtggagctcttcaaggacatggacaatcacctccctgacctgggcatatccagctat
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaacggagtt
gacactgaagttccctcagacggtacactccccctgcgcagacgtcgtagaaatcatgcc
tttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccagattgat
gacgacaacaatgaacataacgactcggacgcagacccagaatccagagagacagacttc
ttgagcggatcggacggtaaaggctcctacaaggtgacgggatggagtctgaagaggcag
cagtttgtggccttgatttggaagaggtttctgtacgctcaacgctccagaaaaggtttc
tttgctcagattgtactccctgctgtgtttgtgtgcattgccctggtcttcagtctcatc
gtcccacctttcggaaagtaccccagcctggagctgcagccatggatgtacgaagaacag
tccctcttcatcagcgatgacgcccctgaagacgctagcacacaacggttattgagtgcc
ctcaccgaaggacctgggtttggaacgcgctgcatggaaggacagcccatacctgacact
ccctgtacgatgggtgatgaagactggtccataccggaggtcccagagacccttctggaa
ctcttccgcacaggtaactggaccatggaggagccgtcccccgcatgcgcctgcagctgt
gacggccgcaagaaaatgctccctgagtgtcctgctggagccggaggactgccaccccct
cagatgaagatcagtgagacagacaccctgcaaaatctgaccaacagaaacatctctgac
tatctggtgaagacctatgcagagatcattgggaaaagtttgaagaacaaaatctgggta
aatgaatttaggtacggaggcttttcattgggtgccaggagcaccaacgtcctccccgca
gctgacgaaattgacgacgccatcgcacgagtgaggaagatttttgaattggagaagggt
gcagccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaagggatggcacagcatgggagccttcctcaac
gtgatgaacaacggcatcctgcgctccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcgccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtcctggtgtccatctgcgtgatctttgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctttactggactgccaacttcatctgggatatg
tgtaactacatcgtcccggcaacgctcgtcatcatcatcttcgtctgcttccaacaaaag
gcctatgtgtcgtccaccaacctgccagtgctggccctgctgctgctcctctatggctgg
tctatcactcccctgatgtacccggcatccttcttctttaagatccccagcacggcctac
gtggtgctgacctccgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtc
atggagctcttcggagacaacgaaattgggggtatcaacaacatcctgaagaacgttttg
ctgatcttccctcacttctgtcttggccgaggtctcatcgacatggtgaagaaccaggcc
atggccgacgctctggagagatttggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtccttttccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtgggtgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcaaaagcct
gttgtagaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcctgggtgtg
aacggagctggaaagaccaccacattcaaaatgctgacaggagactccatggtcaccagt
ggagaagctttcctggctggaaaaagtatactgcgggagatagacgaagtgcaccagaac
atgggctactgtccccagtttgacgccatcaacgaactgctgacaggcagagagcacctg
gagttctacgcagtcctgcgtggagtgcccgagaaggaagtgtgtgaggttgctgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccacggccatggccctaataggaggaccacccgtcgtgttc
ctggacgagcccactactgggatggaccccaaagcgcgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccttgtgcaccagaatggccatcatggtcaacggcagattccgttgcttggggagc
gttcagcacctaaagaataggtttggagacgggtacaccatcatcctgcgtgtggcgggg
gcggaccctgacctgccgccggtgatgaagttcattgagagcgagctgccgggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgccctcctctctcacctccctg
gcgcacatcttcagcatcctggccaagaacaaggacctgcttcggatagaagactactct
gtgtcgcagaccacactggaccaggtgtttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagttaagcgcaaagaggcggtgatggacactatcccgctc
agctcgcggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
