Oncorhynchus gorbuscha (pink salmon): 123993595
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Entry
123993595 CDS
T07892
Name
(RefSeq) nuclear RNA export factor 1-like isoform X1
KO
K14284
nuclear RNA export factor
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03008
Ribosome biogenesis in eukaryotes
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
ogo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123993595
03015 mRNA surveillance pathway
123993595
03008 Ribosome biogenesis in eukaryotes
123993595
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
123993595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123993595
03009 Ribosome biogenesis [BR:
ogo03009
]
123993595
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123993595
mRNA cycle factors
Stress granule specific factors
123993595
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
123993595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_6
LRR_9
Motif
Other DBs
NCBI-GeneID:
123993595
NCBI-ProteinID:
XP_046151884
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All DBs
Position
LG13:83362432..83382866
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AA seq
688 aa
AA seq
DB search
MTFRKWYPNLAVVARVRFDQDQEGVVVQRDVERKGKLPGEHDNRVSGPQFRGGRMSRGPL
RGPIYYDGPARQQRPRGGQMGGFRGPGPGPRVRFEDNYVDVTMNSGSPQDGSSHRRFNPY
RWPNRRGDGQFDRDRRGAGGYRGEGGGGREGGGGGKDKSSWCKMIIPYGRKYDKKWLLTA
LQNLCSVPFTPVQYQIEGHKAQFYLEDACTANALCRVSRQITDTEGYKVIVLMNPCPPPA
ILNTQLKPEDMEHLKQCMAKRFDGSQRALDLNNIRTDPDLVSQNIRAILSRKTFMDAVVK
IIEENIPELVCLNLSNNKLYKLEDVADLISKAPHLKILNLSHNELKSEKELDRLKGLKLV
ELWLDRNPLCDQFKDQLTYISAIRERFPRLLKLDGHDLPPPIVFEVVSPTTTPPCKGSYF
GSEEIKVLIMHFLQQYYSVYDSGNRQPLLDAYHDGASFSLSLPSSQNPNRSHTHISPSEC
LARGSSDLHIYLYIFHHRCSLREYHKDSRNIKRLKDPSTRFRLLKHTRLNVVALLNELPK
TQHDSASFNVDVNTYTTTLLSFTVSGMFKEVDGKSQGAVRAFSRVFIAVPAGISGLCIVN
DELFVRIATTEEIQHAFAATAPTPSSSPVPTLTAPQQEMLSAFSLKSGMNLEWSQKCLQD
NEWDFNKAAQIFTQLKIEGKIPDVAFVK
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcgaaaatggtaccccaacctggctgtggtcgcacgtgtccgatttgaccaa
gatcaggagggagttgtcgtccagagagatgtcgagcgcaaaggcaagctaccaggagag
catgacaacagagtctcgggccctcagttccggggggggcgtatgagtcggggcccctta
aggggcccaatctactacgacggtccggccaggcagcagaggcctcgagggggccaaatg
ggtgggttcaggggccctggaccgggacctcgggtccggttcgaagataactatgtagat
gtaactatgaacagcgggagcccacaggatggcagctctcaccgcagattcaacccatac
aggtggccgaatcggagaggtgatggacaatttgaccgagacagaagaggagctgggggc
tacagaggagaaggtggaggaggaagagaaggaggtggaggaggaaaagacaagagcagt
tggtgcaagatgattattccctatgggaggaaatatgacaagaaatggctgctgacggct
ttacagaacctgtgctctgtacccttcacacctgttcagtaccagattgaaggccataaa
gcccagttctacctcgaggatgcctgcacagccaacgcactgtgcagagtctctcgccaa
atcacagacactgagggctacaaggtgatagtgctgatgaacccctgtcctcctcccgcc
atcctcaacacccaactgaagcctgaagacatggagcacttaaagcaatgcatggccaag
cgttttgatgggtcccagcgagcactggacctgaacaacatccgtactgacccagacttg
gtgtctcagaacatcagggcaatcttgagcagaaagacctttatggatgctgtggtcaag
atcattgaggaaaacatccctgagctggtgtgtctgaacttgagcaataacaagctgtat
aaactggaagatgtggcagatctgataagcaaggccccacacctgaagatcctcaacctc
tcccacaatgagttgaagtcagagaaggagctggataggttgaagggtttgaagctggtt
gagctgtggttggaccgtaacccactgtgtgaccagttcaaggaccagctcacctacatc
agtgctatcagggagaggtttccccggctactcaaactggatggtcatgacctccccccg
ccgatagtgtttgaagtggtatcacccaccactacccccccctgcaagggtagctacttc
ggttcagaagaaatcaaggtcctcatcatgcatttcctgcaacagtactacagtgtatat
gactctgggaacagacagcctcttctagatgcctaccatgatggtgcctccttctcactc
agcttgccctccagtcaaaacccaaacaggtctcacacacacatttctccatctgaatgt
ctggctcgtgggagttcggatttacatatttatttgtatatttttcatcataggtgtagt
ttgagagagtaccataaagacagccgtaacataaagcgactcaaagatccatcaacacgg
ttccgcctactgaagcacacacggctaaacgtggtggcgttgctcaacgagctgcctaaa
actcagcatgactctgcctccttcaatgtagacgtcaacacttacacgaccacgttactg
tcctttacggtcagcggcatgttcaaagaagttgatggtaaatctcaaggcgcggttagg
gccttctctcgggtcttcatcgcagttcctgcaggaatttctggtctatgcatagtgaat
gacgagctatttgtgcgcatcgctacaacggaggagatccagcatgcattcgctgctacc
gcccccactccctccagcagcccagtgcccaccctcaccgccccccagcaggagatgctc
tccgccttctccctcaagtctggcatgaaccttgagtggtcgcagaagtgtcttcaggac
aatgagtgggatttcaacaaagctgcacagatcttcacacaattaaaaattgaaggcaag
attccagatgtcgcttttgtaaagtga
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