KEGG   Oncorhynchus gorbuscha (pink salmon): 123993757
Entry
123993757         CDS       T07892                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7 isoform X1
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03020  RNA polymerase
ogo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123993757
  09124 Replication and repair
   03420 Nucleotide excision repair
    123993757
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ogo03021]
    123993757
   03019 Messenger RNA biogenesis [BR:ogo03019]
    123993757
   03400 DNA repair and recombination proteins [BR:ogo03400]
    123993757
Transcription machinery [BR:ogo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     123993757
Messenger RNA biogenesis [BR:ogo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123993757
DNA repair and recombination proteins [BR:ogo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123993757
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 123993757
NCBI-ProteinID: XP_046152181
LinkDB
Position
LG13:complement(95936449..95944144)
AA seq 193 aa
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLARCLDWILSRSS
TNNLFDLMAWFFL
NT seq 582 nt   +upstreamnt  +downstreamnt
atgttttatcatatttccctggagcatgagatcctgctccaccctcggtactttggtccc
aatctcctgaacactgtgaaacaaaagctcttcacagaagtggagggaacatgcacagga
aaatatggattcgtcattgcggtgaccaccattgacaacattggtgcaggtgtcatccaa
ccaggcaggggatttgtgctttaccctgtcaagtacaaggctattgttttccgtccattc
aaaggcgaggtggtagatgccgtggttacccaggtcaacaaagttggactgttcacagag
atcggccccatgtcctgtttcatctctcgtcactccattccctcagagatggagtttgac
cccaactcaaatcctccctgttataagaccactgatgaggacattgtaatccaacaggat
gatgagattcggttaaagatcgtgggaacaagagtggataaaaacgacattttcgctatt
ggatccctcatggacgattacctggctcggtgcctcgactggatcctgtctcggagctcg
acgaacaatttgtttgacctcatggcttggtttttcctctga

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