Oncorhynchus gorbuscha (pink salmon): 123994010
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Entry
123994010 CDS
T07892
Symbol
tsen34
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ogo03016
]
123994010 (tsen34)
Enzymes [BR:
ogo01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
123994010 (tsen34)
Transfer RNA biogenesis [BR:
ogo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
123994010 (tsen34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
123994010
NCBI-ProteinID:
XP_046152446
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All DBs
Position
LG13:52608669..52611541
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AA seq
307 aa
AA seq
DB search
MDSPEQKITKTVSRVDASKESMANSRQVIGINFCGPTPLMWRADDLKSVRELGIIGTLVG
SLARQPRQNTRLGRPLELLPEEGRLLADMGRAAVIPDSTNEDPEVNPEQVEHYHAGLENS
FQEQGALALEDRKATLMRVMTEKHNENPGSQEDSDGAVRDRLEALARGFSFPRTAMAVQL
CTARAGLSHCPVVRRFLAADWPIPRDERSETRFRVFRDLRRQGFYLTSAGKFGGDFLVYP
GDPLRFHAYFIVVCISMDESMPLCDVLAIARLGSNVKKTVLLCSSGGSQEDDGEEVVYTS
LQWSGMV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggattcgccggagcaaaagataacgaaaactgtgtccagagtggacgcgagtaaagaa
agcatggcgaacagccgtcaggtcatcggaataaacttctgtgggcccacgcctctgatg
tggcgtgcggacgatttgaaatcggtccgtgaactgggaatcatagggaccctggtgggg
tctctggcccgacaacctaggcagaacacccggctggggagacccctcgagctgctgccg
gaggaggggcgactgctggcggacatggggagagctgcagttattcctgactcgacaaat
gaggatcccgaggtgaatccagagcaagtggagcactatcatgcaggactggagaacagc
tttcaggaacagggtgccttggccttggaggacaggaaggcaacattaatgagagttatg
actgagaaacataacgagaatcctggaagccaggaggattcggacggtgcggtgagagac
cgtctcgaagctctggcccgcggcttctcattccctcgcacggccatggcggtacaactg
tgcacagcccgagcagggctctctcactgtcccgtggtgcgccgtttcctggccgcagac
tggcccataccacgggatgagaggtccgagacccggttccgagtgttcagggacctgaga
cgccagggcttttacctcacctcggccgggaagtttgggggagacttcctggtgtaccca
ggtgaccccctccgtttccacgcctatttcattgtcgtgtgcatctccatggacgaatcg
atgcccctgtgtgacgttctggccattgccaggctagggtccaatgtgaagaagactgtc
ctcctgtgttcgtcagggggaagccaggaagatgacggggaggaggtggtgtacacatca
cttcagtggagtggaatggtgtag
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