Oncorhynchus gorbuscha (pink salmon): 123994746
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Entry
123994746 CDS
T07892
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ogo01001
]
123994746
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
123994746
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123994746
Protein kinases [BR:
ogo01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
123994746
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123994746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
PHD-1st_NSD
PML_CC
Trypan_PARP
DUF1351
Trm112p
PRANC
ParB
DUF5054
Motif
Other DBs
NCBI-GeneID:
123994746
NCBI-ProteinID:
XP_046153654
LinkDB
All DBs
Position
LG14:28338344..28350071
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AA seq
1218 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPAEEERAKQLGGSLGLMDTCPVCKLNFHNREPKLL
PCLHSFCNKCLPPPSRNLVNTEQRRDPQLQVDSSKPREILNVIRCPVCRQECWEVEVLDN
FFVKDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTI
RQKEEMSPEAVGASTQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDA
YRNHRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINR
KGKILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLI
LCQIHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSMQQGFPPG
HPSQPGPGPRGEGPPGAFPPGSTAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQ
QGLKLPGPGPGGPPPQRPHQGGSPSQGPPNMVQIQQPGRSYGPPGPQTHPNPRSPTSMLQ
NAGFPPQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPNTGPISTQASIHQRNMMEAAQLR
RSDPSGSSSLSMPNPRASYAPSLATAFPDRHAQGRQNSPMSKSSSSEANIGSASWKRTEP
HAAAPPSAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKPQQQS
IPAPMLEPQLEPEPQPEPQLEPEAWPGPQLEPEVWPGPQLEPEPQLEPEPQLEPEPQPES
LLEAEARPESLLEAEARPESLLEAEARPESLLEAEARPESQLEAEAQPETQVELEADPQP
DREKAPGVSEDDPNEDWCAVCQNGGELLCCDRCPKVFHLNCHIPSLKESPSGEWFCSFCR
DLASPEMEYNPDSQGESPAMKEEPGSERFPPVDKRKCERLLLCIYCNEFSTDFQEPASPL
SIPEYKELIETPMDLSIVKSRLESKESPRYCSAEEFVKDVRLIFRNCAKYYQADTEVGGA
GLSLEEYFEEQLKLLYQDRSFSGGREEGMIPPVEDEMEEGMEDDGMAPNEGDMPPVEDDL
TPVEEGMPSMEKEGTEEAPVEGGMAEEGIPPIEESMEEEGEETSPVKGDSPPSDATEPVD
PSTMGASSPNLPSKDAPQPLSSTPDNPPCEEAPQPLSDTPDNPPDTSPADSQDTSPAAGL
AIENEGTTEEVRDEAEEE
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccggaagctgctgtggacaacgatgaccttgttattattgtggaaaac
gaggcagagagcttgccagctgaagaggagagggcgaaacagctaggaggcagcctcggt
ctcatggacacttgccctgtctgcaagttgaatttccataacagagagccgaaacttctg
ccatgcctccactctttctgcaataagtgtcttccacctccttcaaggaacttagtcaac
actgaacaacggcgcgacccgcaacttcaagtggacagctcgaaaccacgtgagatcctc
aatgtgatccgctgcccagtgtgtcgacaagagtgctgggaggtggaggtgctcgataac
ttctttgtgaaggactctgtggaggttcccagcagcacagtggagaagaccagtcaggtg
tgtatgagttgtgatgacaacacagaggccacggggttctgtgtggagtgtgtggagttc
ctgtgtgtgacatgtattgaggcccaccagcgagtcaagttcaccagggatcataccata
cggcagaaggaagagatgtccccagaggctgttggtgcatccacacagaagccagtgttt
tgtgacatccacaagcaggagcccctcaagctgttctgtgagacctgcgaccgtctcaca
tgcagagactgtcagctgctcaagcacaaagaccacaattaccagttccttgaggatgcc
tacagaaaccacaggcaacacctggaaaacatgacacatcagctacaggagaagaggaaa
gccattgaagaagtgtccaattgcatcaacaatggactccagcaagtcgatgaaaaccgc
aaatctgtcaccaatgaaataaagaaatcaatttgcaacttgatcatggagatcaacaga
aagggaaaaatcttggtcaatcaacttgagacactgactaaggaccatgaggtcggactg
aagaaacaacaagaagatgtcagccacctgaccagacatctagatcacgtcatcaacttc
accaagtgggccacagccagtcacagtggcacagctctgctgtactgcaagagactgatt
ctttgccaaatccattacctaatgagggccaactgtaacgcatccatcgtccctcagagc
tcagtccgcttccagtgtcgctccggtttctgggcctcaaatgtcgaccttgggtctttg
gcagtagagagaatccctggtcgtcagcccagttccatgcagcagggcttccctcctggc
caccccagccagcctggccccggccctagaggagagggccctcccggggccttccctcca
ggctccaccgcccaccagcgtgggagcaccctggcccagctccagctgcaggtagagaag
cttgctcagcaccccaacagggctggacagccccctcccaatcattggtcctggtaccag
cagggtctgaaactcccggggccaggtccagggggcccacctccacagaggccccaccag
gggggttctccatcacagggtccccccaacatggtccagatccagcagccaggccggagt
tacggaccccccggcccccaaacccatcccaaccccaggagccccacctctatgctgcaa
aacgcaggcttccctcctcagtctctaagggatctcatccacaactccagcttccctccc
aaaccaatggatgtgctacagggtacctcccgctactctcatgcacctcctaacacagga
cccatcagcactcaagcctctatacaccagcgtaacatgatggaagccgcacaactgagg
aggagtgaccccagtggatcttcatcattatccatgcccaaccccagagctagttatgct
ccgagcctagccactgccttcccagacagacatgcacaaggaagacagaattcccccatg
tccaaatcttcctcctctgaagccaacatagggtctgcttcctggaagcgtacagagcct
catgctgcggctcccccctcagctaagcggaggcgaaggtcgtcccccggaccaatcatc
gtcatcaaggacgaaccagaggacgatgacgaagtcagctttgtgcagtctagtgttgga
gcctcagccagcctgccagacagcagtacaggcatccagcccaagccccagcagcagtct
atcccagcacccatgttggagccccagctagagccagagccccagccagagccccagcta
gagccagaggcctggccagggccccagctagagccagaggtctggccagggccccagcta
gagccagagccccagctagagccagagccccagctagagccagagccccagccagagtcc
ctgctagaggcagaggcccggccagagtccctgctagaggcagaggcccggccagagtcc
ctgctagaggcagaggcccggccagagtccctgctagaggcagaggcccggccagagtcc
cagctagaggcagaggcccagccagagacccaggtagagctagaggctgacccccaacca
gaccgagaaaaggccccaggtgtctctgaagacgacccgaatgaagactggtgtgccgtg
tgtcagaatgggggagaactgctctgctgtgacagatgtcccaaagtcttccatctgaac
tgtcatataccttcacttaaagagtctccaagtggtgagtggttctgttcgttctgtcgt
gacctggccagtcctgagatggagtataacccagatagccagggagaatcaccagccatg
aaggaagagccaggatcagagagattccctccagttgataagaggaaatgtgagagactg
ttgctctgcatctactgcaacgagttcagtacagatttccaggagcctgcctcaccgttg
tcaatcccagagtataaggagctgattgagactccaatggacctgtctatagtgaagagc
aggctggagtctaaggagagcccacgttactgcagtgctgaggagtttgtcaaggatgtc
aggctcatattcaggaactgtgcaaagtattaccaggcagacactgaggtgggaggtgca
ggactgagcctggaggagtactttgaagagcagctcaagctcctctaccaagacaggagc
ttctctgggggcagagaggagggaatgataccccctgtggaggatgagatggaagaaggg
atggaagatgacgggatggctcctaacgaaggggatatgcccccggtcgaggacgatcta
acacctgttgaagaagggatgccttctatggagaaagaaggaacggaagaggctcctgta
gaaggagggatggcggaagaagggatacctcctatagaagagagcatggaagaggaaggg
gaagagacttctccagtgaaaggagactcaccaccttctgatgctacagaaccagtagat
ccatcaacaatgggtgcatcatcacccaaccttcccagcaaggatgctcctcaacccctc
tcctcaaccccagacaaccctccctgcgaggaggccccccaacccctctcagatacccca
gacaaccctcctgacaccagccctgctgactcccaggacaccagccctgctgcaggctta
gccatagaaaatgaggggacgactgaagaagtgcgagacgaagcagaagaggaatga
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integrated database retrieval system
