Oncorhynchus gorbuscha (pink salmon): 123994837
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Entry
123994837 CDS
T07892
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03440
Homologous recombination
ogo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123994837 (brca2)
03460 Fanconi anemia pathway
123994837 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
123994837 (brca2)
03036 Chromosome and associated proteins [BR:
ogo03036
]
123994837 (brca2)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
123994837 (brca2)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123994837 (brca2)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
123994837 (brca2)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
123994837 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
123994837 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA2
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
123994837
NCBI-ProteinID:
XP_046153816
LinkDB
All DBs
Position
LG14:complement(34591568..34629250)
Genome browser
AA seq
2834 aa
AA seq
DB search
MDIRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSRDWGDTEKDNPSTAISCGQDGSFR
TPLGKCPLDGDMFSTPKIFRQRRPQSPETLIEDAVFFPDQGTSATEKMDTSPCLFGKSID
SGTPSKSYRTRLHGDSFGLLDTPKHSTQAHSTKRISESLGAQLDPDMSWTSSLNTPVMSP
TIILTKSEEHSLMCPVRIATEEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHNGLDSH
LPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEICSTMTGVVDGAEDVLSIFFSNKSL
ALQRVKTNERIKRKPSGATKEHVPTSTMEHDKVSSERAGEYQHTRETSEPLESRTDMKSG
DLVTSQWIPINVPDFSGYDMDSFHHEGSSSTKHIIPQGGKGETFRDFTGSQQEATVQVES
ALSRRTLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQEKYVTQMLPA
SPGTAPRGENQNMKQSKTVPDEAEFNNLNKTALDGKKPLVQKSAAEENIVSQAPSKDPDL
DMSQLCRVFAQDFSQVIDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRLEWGQKP
EHFNSGISDEMHIPGSQFSNSANTSRMKSTVCDSGFPSSTLSDVTQTESSNVHPSSEKSY
GNQSSRGFKTGNNWIISLPPEAIKKAKASLDYLIEENMTDVVTAASEVKPVLSCVTGSRL
STEVKFISPLNIAKRSKQASVKLNGQVHVPTHQSINVSVFSHPGSGFKMASNKKIHFFSA
NLEKDEDLFKEIEDEIPAVNIPEISLPEEDNMSCGLELVDGSHLPPLLYTRQRSVNSQGP
LTASQRADVSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFLTGIDF
DDSFDSDVEKQSVKMVTPDKKTTISHCKEICQVTTKIKSSGASSSNSTEKSKEHVIHRRV
LYIPSYSSKNIAEHSFGLLTKSTNKSHLLDMDTNTSGMECERKNLPKLDVGFKTAGGNAM
IVSEKCLSKARALFADFEEKNCAPKCAVKNTEQVEISPVQYRGEVDTNVDSNVTHFHGPE
KKVDLKELHDEYIDKIKVDFTHSHTHGDGGFQTASGKGVTISAKALQKTNAVFKDCDAME
SSGCASEKLSKTSVVSETGSNNFERNNCGFSTARGKRLDVSEKSLLTLLNDCDELENSKP
GKIPSLNAKIPSQNIQQKSYCDFKKPSIKAASISARIPFTAKTPFDSGMSHDVLGAKSKM
LEPENSQTHAKDPLKNGCGFSTASGKIVSVSEGALLKAQALLSECNVDGEELSKSKKKIR
VDLHNPTQKHSGFKTAGVKEVTVSPKAHKQAQALFNNCDFNMVSLISAEAKQGNIDIKSA
DGLMNNPGKSYCAFMTAGGENVHVSEKGILKAKSILNENLDNCTDSNAIEEAWFSDGRFL
LLTEDGTGVKKGARNKSNYSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSILNECDVIE
NPQPENGHNLHLEKIPTKETHEISHGSAASGKGVFISEKALQHVKSVYVLGETGNAKYSV
GSNPVGSHFGFSTASSKGLSVSEKALQEACDDTFARDTDPHERSEENRPLKVPSPHINVQ
RVPVKAVRLEDREVIQTIVGMECKSLSVECQAESSLLNFESLGFSGCSVTQRRYFAQEAM
DCTKALLEDEDLTDHCPGTPIQAKPMSCKGGFEMRSGIWKRSAEDLGMTDQPPLKRKLLT
KFDRTVDCIRRSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRANQRCVDTRLNKPE
PQKTTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQGSSGLQDKTRAPGVFVSPFRKNNR
LTREGSFKPSEDNYSPFISEIYTKTTSVPLPEYNPITDTGSDNAKESIKDPQNIDKTDRG
DDCGHCLPVTLGGEDATAEESIAGQLAPDATGTLLNVVYDAECLQLARDMQDMRIRKKKR
QTIRPLPGSLYLAKTSGVARLNLREAVGGWHPVQHTHKQLYGYGVHRHVWDISSDSAEAF
RFVCRHFFRREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKLISEDWVF
NHYRWVVWKRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRKIMERDDT
AVKTLVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWLTDGWYAIKA
QLDVPLTAMLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANCTRAARWYT
RLGFYRNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRAGRAEERE
ARRHGNAKHRDMEILFAKIQTQFEKEEDVCSKPRGRRRTLRGRDIETLLDGEELYDAVEN
DPVYLEGRLSEQQREALNSYRLCVGERRQEALQERFRQALESTREGEGRSCHNRDVTPIW
KLSVADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEGKKRAGNTSIQLT
ATKKTQFQNLQASAGWLSEIFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISITDRQGHS
PVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPTPIRSAIPGL
YAGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFRTAEERLSNLVQVSVQCLPPLPWKA
AKPDSRTTMTPQQSVRSVGPFTPLNSIVPPPPACFSGGDNKDPKSLKRKRGLDYLCRIPS
PPPLCPLGTMTLPSPCVNKTFNTPRRAEPHRILKTPLAPAPQHVHLPLEDEWVEDEELVM
IDTQALHDGIERDT
NT seq
8505 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaagagctcactgctaaagcttccagtcgggattggggt
gatacagagaaagataatcccagtactgcaatatcttgtggacaagatggcagtttcaga
acaccattggggaaatgtccccttgatggtgatatgttctctaccccaaagattttcagg
cagagaagaccacagtctcctgagacgttgatagaagatgcagtgttttttcctgatcaa
ggaacctctgcaactgaaaaaatggacacaagcccatgcttatttggaaaatcaatagac
agcgggacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccgaaacactctacgcaggcacactctaccaaacgtatatctgaaagtcttggt
gcacagttagaccctgatatgtcctggaccagttctctcaatacacctgtcatgtcgccc
accataattttgactaaaagtgaggagcatagtcttatgtgcccagtaagaattgctacg
gaagagcaggttatgtttgtgcgaaagcttttcccttcggccaaggagtctagaagcaca
atgctgtcaccagaacagaatgatagacctctctgtcaacacaatggactggattcccac
ttgcctggtgtgattgacatctcccctggctttcaagacacgttacctggtgacagtggc
agccattggaaacagactttaccagatgctattgaagacggagaaatctgcagcacaatg
accggtgtcgtagatggagccgaggatgtcctctccatattcttcagcaacaaaagtttg
gctttacaacgggtgaagaccaacgagagaatcaaaaggaagccaagtggcgcaactaag
gaacacgtacctacttctacaatggaacatgacaaagtatccagtgagagagcaggagaa
taccaacacaccagggaaacctctgagcctcttgagtccaggacagacatgaagtctggg
gatttggtgacttctcagtggattccaataaatgtacctgacttttcaggctatgatatg
gattcatttcaccatgaggggtcttcctctactaaacacataattccacaaggtggcaaa
ggtgaaacattccgtgatttcactggaagccagcaggaagccactgtccaggtggagtct
gctctttccagaagaacattaccctgcaccagccagccagagggatctcaattgacaggg
tctgtagtcgaaagctctctagaacacacctttcccaggaaaacaaggacatttgtttac
tgtgtccaaaatccacttctgtcagtgcaagagaaatatgttactcagatgttacctgca
tcacctggaactgctcccagaggtgaaaatcagaacatgaaacaaagtaaaaccgtacca
gatgaagctgagtttaataatcttaacaaaactgccttggatgggaaaaagccgctagtt
cagaaaagtgcagctgaagaaaatattgtttcacaagcaccaagcaaagaccctgatctt
gatatgtcacagctttgcagggtatttgcgcaagattttagtcaagtaattgactacagt
caaccatgcagcaaaagagcagatgctattaaaaatggcttctctgcatcagcttgtctc
tcagcaatgagactaaggaacagaaaactgttgaatagactagaatggggtcagaaacct
gaacattttaactctggcatcagtgatgaaatgcatattcctggttctcagtttagcaac
tctgcaaacacatctagaatgaagagtacagtgtgtgatagcggcttcccctcctccacc
ctttctgatgtcacacaaacagaatcatccaacgttcaccctagctctgaaaaaagttat
ggaaatcaatcatctagagggtttaaaacgggtaacaactggattatctctttgcctcca
gaagcaataaagaaagcaaaagcatcattagattacttaattgaggaaaatatgactgat
gttgttactgctgccagtgaagtgaaacctgtgttgtcatgtgtgacaggaagccgactg
tccacagaagtgaagttcattagtccactcaacattgccaaaaggtcaaagcaagccagc
gtaaaattgaatggtcaagttcatgttccgacccatcagagcatcaatgtttcggttttc
tcacaccctgggtctggtttcaaaatggcctccaataagaagatacattttttttcagca
aatctggagaaagacgaggatctgtttaaggagattgaggatgaaatacctgcagtcaat
attcctgagataagccttcctgaggaagataacatgtcatgtggattggagcttgttgat
ggatctcatttaccacctctactctatacacgccagaggtctgttaatagccaaggtcca
ttgacagcctcacagagagctgatgtttcagaattgtgcagtctcttagaagctgcagac
agccaatttgagttcacacagtttaaaccagcaaagctgaacttctatgttccagatggt
agcccccctcgtcaatctgagaaagaattggatcccgactttctcacaggcatagatttc
gatgacagtttcgactctgatgttgagaagcaatctgtgaagatggtcacccctgacaaa
aagacaactatttctcattgcaaggaaatttgccaagtaaccaccaaaattaaatctagt
ggggcatcatccagcaattcaacagagaaatccaaagaacatgttatccacagaagagta
ctttacattcccagttatagctctaaaaacatagctgagcattcctttggtttgttgaca
aaatctacaaacaagagccatttactcgatatggatacgaacaccagtggaatggagtgt
gaacgcaaaaatctccccaagttggatgtgggttttaaaactgctggcggaaatgctatg
atagtttcagagaagtgtctgagcaaagcaagggccttgtttgcagattttgaggaaaaa
aactgtgcacccaagtgtgcagtaaaaaatacggaacaagttgaaatttcacctgttcaa
tatagaggcgaagttgacacaaatgttgattcaaatgtgacacattttcatggccctgaa
aagaaagtagatctgaaggaactacatgatgaatacattgacaagattaaagtggacttt
acacattctcacacacatggggatggtggtttccagacagccagtggtaaaggagtgaca
atctcggcaaaggcccttcaaaaaaccaatgcagtcttcaaagactgtgacgctatggaa
agttcaggttgtgcatcagaaaagctgagcaaaacaagtgttgtatcagagactggcagc
aataattttgagagaaacaattgtggcttcagcactgctcgagggaagagacttgatgtt
tctgaaaaatctctactgactctcctgaatgactgtgatgaattggaaaattctaagcca
gggaaaatccccagcttgaatgcaaagataccaagtcagaatattcagcagaaaagttac
tgtgattttaagaaacccagtattaaagcagcctccatatcagcaaggatcccttttaca
gcaaaaactccatttgatagtggcatgtcacatgatgttctaggggcaaagagcaaaatg
cttgaaccagaaaattctcaaacccatgctaaagatcctttgaaaaatggatgtgggttc
agcactgccagtggtaaaatagtgtctgtgtcagaaggggcgctattgaaagcacaggct
cttttgagtgaatgtaatgtagatggagaggaactttctaaatcaaagaaaaagattaga
gtagatcttcataacccaacacagaagcacagtggatttaagactgctggtgtcaaagaa
gttaccgtatcacctaaggcccataagcaagcacaggctcttttcaacaactgtgatttc
aatatggtcagcttaatcagtgctgaagcaaagcaagggaatatagacataaagtctgct
gatggtctgatgaacaatccagggaaaagctattgtgccttcatgacagctggtggagag
aatgtgcatgtatctgaaaaaggtattttgaaggcgaagagcattctgaatgaaaacctt
gataactgcacagactcaaatgccattgaggaggcttggttttcagatggtagatttttg
ttactcactgaagatggtacaggtgtcaaaaaaggagcaaggaacaaatcaaattattct
gacctcaacggggatgaaaagagctgtgatttcagcactgccggtgggaagactgtgcat
atgtccgatggagcactccagaaagcaaagtctattttgaacgaatgtgatgtaattgaa
aatccacaacctgagaatggccacaacttgcatctggaaaagattccaacaaaggaaacg
catgaaatctctcatggtagtgcagccagtgggaaaggggtgtttatttcagaaaaggct
cttcagcatgtgaagtctgtgtacgttctgggtgagactggtaatgcaaaatattcagtt
ggcagtaatccagtcggaagccattttggttttagcacagccagtagtaaaggactgtct
gtttcagagaaggcacttcaagaagcgtgtgatgatacctttgccagggatactgaccct
cacgaaagatctgaagaaaataggccactgaaggtcccttctccccatattaatgttcag
cgtgtgccggtcaaagcagttcgactggaggaccgcgaagtgatccagaccattgttgga
atggaatgtaagtctttgtctgtagaatgtcaagcggagtcttccttgttaaattttgaa
tcccttggattcagtggctgctctgtgacccagaggaggtactttgcccaggaggccatg
gattgtaccaaggctcttttagaggacgaagacttgaccgatcattgtcctggaacacca
atccaagctaaacccatgtcctgcaaggggggttttgagatgagaagtggaatttggaaa
aggtcggcagaggatttagggatgacagaccagcctcctctgaaaagaaaactcttgacc
aaattcgacagaactgtggattgtattcgacggtcaaaactcactccagctaaaagcagt
tcagatggtatatttaaagacaggagagtattcaaatataatgtggctcttcaacctaat
gtcacgaggccatatcgcgctaatcagagatgtgtagacacaaggctgaataagcccgag
ccacagaagacgacgtcagatccaactgccgaagaccgtaaaccagttagctccaagaca
gctgtatttgtccccccattccggaagaatgtcaagcttgagccacaggggagcagtggt
cttcaggacaagactagagcgcctggtgtgtttgtttccccatttcgaaaaaacaaccgc
ttaaccagggagggttcctttaagccttcagaagataattattctcccttcatctctgaa
atttataccaagaccacatctgttccacttcctgagtacaaccccatcactgacactggt
agtgataacgcaaaggagtccattaaggacccacaaaatattgacaaaacggaccgaggt
gatgattgtggccattgcctccctgtcaccctaggaggagaggatgccactgcagaggag
tctattgcaggtcagctagcccctgatgccaccggtacccttctaaatgttgtttatgat
gcagagtgcttgcagcttgcccgagacatgcaggacatgaggatcaggaagaagaagcgg
cagaccattagacctctccctggcagcctgtacctggccaagacatctggggtggccagg
ctgaacctcagggaggctgttggaggttggcaccctgtacaacacacacacaaacagctg
tatggctatggagtgcaccggcatgtttgggatatcagcagtgacagtgctgaggcgttc
cgctttgtttgccgacacttcttcagacgcgaggcgtttgtagaggggtgcattcagctg
gccgacgggggttggctcattcctcgcaacgatggaactgcagggaaacatgagttccac
agagcgttgtgtgacagccctggcgtggaccccaagctgatcagtgaggactgggtgttc
aaccactaccgctgggtggtgtggaaacgggcctgcatggagagggcattcccagaggtg
atgggcagcctctgtctcacaccagaacaggtgctcctacaactgaaatacaggtacgac
ttggaggtggacaacagcaagaggtcagctctaagaaagatcatggagagagacgacacg
gcagtcaagaccctggtgctttgtgtatgtggtgttgtcaccaaaggccataacccaaca
aggcagagctggagtgagaccaagaccaaaaccccacccgggagcgccgcagggtctaaa
gcgaagtcgtcccctgtaggcttgatctggctgacggatggctggtacgccatcaaggcc
cagctggatgtcccactgaccgccatgctccaccggggccgcctggcgattgggggaaag
gtgctggtccacggggccgagttggtgggatctcaggatgcctgctccccactagaggct
cccgactccctcatgttgaagattggggccaactgcaccagagcggcgcgttggtacacc
aggctagggttctacagaaaccctagtccgttcctcctccccctctcctccctctacagc
aacggaggccccgtgggctgtgtggacattgtggtgctgaggagctaccctacccagtgg
atggagaagaagtcggatggagggtttgtgttccgtgcaggccgtgcagaggagagggag
gcacggcgtcatggcaacgccaaacacagagacatggagatactgttcgccaagatccag
acacagtttgagaaggaggaggatgtttgcagtaaacccagaggccggagacggaccctg
cgtggtcgagacattgagacactgctggacggggaggagctgtacgacgcggtggagaat
gacccagtttatttggagggccgtctgagtgagcagcaacgggaggcgttgaacagctat
aggctttgtgttggtgagaggaggcaagaggcactgcaggagcggtttcgccaggctctg
gaaagcacccgggagggcgagggcaggagctgtcacaaccgagacgtgacccccatctgg
aagctcagcgtcgctgactccagggccaagccgggcagcaatgcagtgtacctgttgaat
atctggcgcccctccatggatctgcagtccttgctgaaggagggctgtcgatacagggcc
taccaactatccacgtcggagggcaagaaacgagccggtaatacgtccattcagctcacc
gccaccaagaaaacccagttccagaatttacaggcttctgcagggtggttgtctgagatt
ttccaagcccgagaggcggtcggctttcgcgttctcctgaaccgcgacttaaagccgctc
tgtggagaggtggatctggtaggctacgtcatctccatcacagacagacaaggtcactct
ccagtggtgtatctagtggatggctggctggactttgtcaaggtgcgctgctgcagcagt
ctggtccagcagggcttggaggaggtggtcaagcctctggctctggtggccctcagtaac
cttcagctcagagcccatccctcctcccccacccccatccgcagcgccatccctggccta
tacgctggagatctagtctcgttttccaccaaccctaaggagccacatctacaggaggct
gctgctcaactcaggacccttgtccagggccaggaacacttcttcaggactgcagaggag
aggttatctaacttagtccaggtgtctgtccagtgtcttcctccgctgccatggaaagca
gccaaaccagattcaaggactactatgacaccccagcagtcagttcgaagcgttggcccc
ttcacccctctgaacagcatcgtcccccctccacccgcctgcttctcagggggggacaac
aaagaccccaagagcttgaaaagaaagaggggcctggactacctgtgtcgcatcccctct
ccccctccactctgccccttgggcaccatgacattaccctcgccgtgcgtcaacaagacc
ttcaacacccctcgcagggctgagccccaccggatcctaaagacacctctggcccccgct
ccacagcatgtccacctgcccctagaggatgagtgggtggaggatgaagagctggtcatg
attgacactcaggccttacacgatggcatagagagagacacgtga
DBGET
integrated database retrieval system
