Oncorhynchus gorbuscha (pink salmon): 123994874
Help
Entry
123994874 CDS
T07892
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
123994874 (taf1b)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
123994874 (taf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
123994874
NCBI-ProteinID:
XP_046153893
LinkDB
All DBs
Position
LG14:37159062..37173237
Genome browser
AA seq
600 aa
AA seq
DB search
MDEEQTGGYRDICGQCGEVNWGVSDEGRFYCRSCHNVIERTKEVVDTNTFMVGTSRVSSI
SKGTRRKKLEQGREWMVCEGFQFILKHQAEALLAMGVCPQFKDDVLCQFWRMYLQKSRQA
YTKNPVHDGKFRLRSQASGESDSAPESSVMSDSMMSASETDGDGDWASGGGSVSGHTSDG
ASSVCSGSIDAVSYLTTRQRRSQGLMSMPKTLALCHLALLWAREAITLADLLRFVNEGHI
PYVNAYEDFPEEMKLYGRDSLIFRVESIPSYSHLHKEAQTLAVFLELPLFPPITLDCLLH
PSLLTLRYLTEANLPDELHDWVCRIMEKAGMESSVTFEPMRSRSPLPHYDVQAAALIIVA
MKLLFKLDDHTEWDLSNDASDKNKENPDGNSFNLRWWYRAMQTALTTAAQRQQDNIARKH
WKPQKPLYTSKKDKSVVLKRRRIAEQLQLSFQKLSGSPVAPPSTPPSSFCFRWGEEGEEV
WDGPSHHHLTLDSSIRQRGASLQPANPEYWHPALRACKPRFCKSHYAEIEVTLPRMYVWL
LDLFSFLLGVKPGCVYEEVLKVERRFLRSSKSQPRARATPRKTQAKKLHKRKQTSKTCSR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacaaacggggggctacagagacatctgtggccagtgtggagaggtgaac
tggggggtgtcggatgagggtcggttctactgcaggtcctgtcataatgtcatcgagaga
acaaaagaagtggtggatacaaacacttttatggttggtaccagcagagtgtcctccatc
tccaagggaaccagaaggaaaaaactagagcaagggcgagagtggatggtgtgtgagggc
tttcagttcatcctaaagcaccaggctgaggctcttctggccatgggagtctgcccacag
ttcaaggatgacgtgctgtgtcagttttggagaatgtacctacagaagagccgacaggcc
tacaccaagaatcctgtgcatgatgggaaatttagactgcgttctcaggcctctggggag
tcagacagtgctccggagtcgtcagtgatgagtgactctatgatgtctgcctctgagaca
gacggggatggagattgggcaagtggaggaggctctgtctcaggtcacaccagtgacgga
gcctcctcagtgtgttccggttctattgatgccgtctcgtacctgaccacgcgccagagg
aggagccaggggttgatgagcatgcccaagaccctggcactgtgccacctggccctgctg
tgggccagagaggccatcacactggcagacctgctcaggtttgtgaatgagggccacatc
ccctatgtgaacgcctacgaggacttcccagaggagatgaagctctacggccgagactca
ctcatcttcagagtggagtctatcccctcttacagccacctgcacaaggaggcccagacc
ctggctgtgttcctggagcttcccctgttcccccccatcaccctggactgcctgctgcac
ccctccctgctcactctccgctacctcaccgaagccaacctgccagatgagctgcatgac
tgggtgtgcaggatcatggagaaggctggtatggagtcgtccgtgacctttgaacccatg
aggtccagatcccctctcccacactacgatgtccaggctgctgccctgatcatcgtcgcc
atgaagctgctcttcaaactagacgaccacactgagtgggatttatccaatgatgcaagt
gacaagaacaaggagaacccagatgggaacagctttaacctgaggtggtggtacagggca
atgcagactgccctgaccacagctgcacagagacagcaggacaatatagccagaaagcat
tggaagccccagaaacctctatatacctcgaagaaagacaagtcggtcgttctcaaaagg
agacgtattgcagagcagctccagttgagtttccagaaactgtctggttcccctgtggcc
ccaccatccacccctccctccagcttctgtttccgctggggtgaggagggggaggaggtc
tgggacgggcccagccatcaccacctgaccctggacagcagcatccggcagagaggggca
agcctccagcccgccaacccagaatactggcacccagccctgagggcctgcaagcccagg
ttttgtaagagccactatgcggagatagaggtcactctccccaggatgtacgtgtggctg
ttggacctcttctccttcctcctgggggttaaacctggctgtgtatacgaagaggtactg
aaggtggagaggcgcttcctcaggagcagcaagtcccagcccagggcaagagctacgccc
agaaagacacaggccaaaaaactacacaaacgcaaacaaaccagtaaaacatgttctcgg
tga
DBGET
integrated database retrieval system
