Oncorhynchus gorbuscha (pink salmon): 123994881
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Entry
123994881 CDS
T07892
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123994881 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
123994881 (arid1b)
03021 Transcription machinery [BR:
ogo03021
]
123994881 (arid1b)
03036 Chromosome and associated proteins [BR:
ogo03036
]
123994881 (arid1b)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Helix-turn-helix
ARID
123994881 (arid1b)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123994881 (arid1b)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123994881 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
123994881
NCBI-ProteinID:
XP_046153899
LinkDB
All DBs
Position
LG14:complement(37322667..37438690)
Genome browser
AA seq
2290 aa
AA seq
DB search
MAAQVATAPTSNGKKRSNLASSLSQDLKSGKSGVVGGAVLGVGNGTSVHAMNNVERHELN
PTSRARASPANNDSNPREKESRDSRSASFSTSNSSMETGMFVSHKVKNVGGEETPSLHHT
PPQQQPFNQFLQHQQRQIQNNNQQSLHGESGNRQHGGKGNVVLGNTVERHQQQEMLNKNE
DDQPSKTEDRLDSRYEHASSGPTNNNINPSQSGTSSVSEFNSYYGNGKGGPCFDQHGGQQ
SPGSGIMHSVQQNMDQVQQNSHEGYHNNPYNHYPTYRPGYGNSGYGMMSPSRQGNNMMGL
GSNTAAANHSKAAMAAASSGGANVGGFQRFPGQTQQHPSGATPTLNQLLTSPSPMMRGYG
GGYQDYTNPSAQQQQSSMGLTKDINPQYGSVTHVWGGQQRNHPAMSPGNNGQGSGRSQVP
PMDAMAMKRSQLYGIGNNPYSQQQQGGGGSYPGQPYGSPSPHRYPMGMHGRGQVGMSGMQ
YPQQQQQMVAQYGQQHQGQQGGYCQPQGQSPYFSPPQQQPTAPTQPPYMQPRPPPPPQQD
VSQEGYGNRGQSAMTPEKPNHEEMGLSQQDRPSSLPDLSGTIDDLPTGTEVAVSSAVSAS
GSTSSQGEQSNPAQSPFSPHVSPRLPGLRSGPSPSPVGSPVGSSQSRSGPISPASVPGTQ
MAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTPGPQQSGQGPPVSPHPSLGGSMH
PGSYHQQQQGGPGPSYGSQTSQYGPQGNYPRPPNYGGAPSANYSGPGPGMSNSLGMNASS
PMHGQGPGQPCGSMPAGRGLGPGASGRPYPCATTNTMAPTSPSMPQPAGQGQGMRPPMPS
VNRKPGHEAGPGPNAMQGPNAGSNPSAQGRQGMTPMPHHPGMNPMGPGGVGPSPGGLYSQ
QPGANTSGRMTPQGPHPLYNAPPPSGPMQMGGEGMVGPPDPKRRPPEQHREGNTPAPAVE
PPPKPKDRYSSSQCMSKPPTPCPLSPSPASLSSCHEAQDSRDIISSHPAVAGAWPKTPTS
PKPSPATMTNEKIRILYEMGGEPERRMWVDRYLAFMEERGTPVPMLPAVGKKPLDLCRLY
LSVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIHYLFAFECKVERGEEPPL
EIPGETKKQAQAHQARIQPPSPANSGSLQGPHTPQSTGSSSMSEMPEGMKRPTPATTPHG
HMTPQPGNRNSGGIRVQDPFSEISDPAFHKRGPMPSGAPYQQSGGTSDPSMRMQYDANKD
LYGGPQKGPGGSESYGPGQMPSGALQDMYPRGPPSGAMPGMGMGPGPRPQYPYGPGYDRR
PDHVMGPEGGMAPPGGQNNMGPSSGDPSMYSANRYPQQRPHGHESYGQQQYPHGPMPYGS
HQPGMYPQQQGYKRPVGPEVMYGPPAKRHEGEAYGMQQYGGQQPGMYSQYGGNYMGPERR
PMQGQYPYPYSRDRMGATQGPQQHAMMSGGPPASSGASAEGPQLNMWHPRTDMGYPGPYR
GQLGQGPPYPGLGRGPGDDPEGRNSPDGQWPPGPPGQHQPPYPPHSSSASSMPPMASRQP
TSSYQSNPAMANHISRAPSPSPFPRPMGGSGPLSPNNGGPYMASLKKAGMPGSMPGSLGG
GMSGQGILPLHRDISFPVGSVEATLPKLKARRRLTSKETGTPEAWRVMMSLKSGLLAEST
WALDTINILLYDDNTVSSFTLAQLPGFLELIVEYFRRCLISIFGILDEYEVGTEGQRTLL
GPIADQEEEPTIPELDSQLREEQRDNRLEEAEIEKPTANGSTEEAVPDKKTEEPVEVTVK
EEKVEGEESEVGATTEQSEPPQPEGPPEPRPKQASKYDKLPIKVEEKSAEEDQVEERQGL
SLPRGFNSGLLHWKAGGGDSTAHIQTHFEKRSEETDSKHTEERKVEEGAIVEKTMTETAT
VDDMLSARPGSQSLSERNDLTGAYSFVGGAQTQSPILTLLEDEPRCWDEAPLSTAEPWQD
ALARRCVCVSNIVRGLSFIPGNDNDMSRHPGLVLILGRLVLLHHLHPQRRRTPPSYQREE
EQGRACSKDEWWWDCLSALRENTLVTLANISGQLDLSLYPESICLPVLDGLLHWMVCPSA
EAQDPFTTAGCSSSLTPQRLVLECLCKLSIQDNNVDLLLATPPFSRQEKLYATLVRHVGE
RKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVGTLIGFLEDCVAMAQHQQGPHSLLH
PAPVPHPEPPSVNMMCRAAKALLAMAKVKENRPEFVLYESRLLDSSLSSVLSSAVAAIMC
EVLFKIGRSS
NT seq
6873 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaaatggtaagaaaaggtcgaatttagct
agtagcttgagtcaagatttgaaatctggcaagtctggagtagttggtggagctgtgctt
ggggtaggaaatgggactagcgttcatgctatgaataatgtagaacgccatgaactgaac
ccgaccagtagagctcgagcttctcctgcaaacaacgattcgaatccacgtgagaaggaa
agtagagattctagatcggcgtctttttcgacttcaaattctagcatggagacgggaatg
tttgttagtcataaagtgaaaaatgttggtggtgaagaaactccatctctccaccacaca
cctcctcagcaacagccattcaaccaattccttcagcaccaacaacgccaaattcagaac
aacaaccagcagtcgctacatggagaaagtggaaaccgccaacatggaggaaaagggaat
gttgttttagggaatacagtcgaacgccatcagcaacaggaaatgctgaataaaaatgag
gacgaccaaccgagcaaaacggaagaccggttggacagcaggtacgagcatgccagttcg
ggaccaacaaataacaacatcaacccgtcccaaagtggtaccagctcggtttcggagttt
aatagttattatggaaatggtaaaggagggccttgctttgatcaacatggcggacaacaa
agccctgggtctgggataatgcattcggtacaacagaatatggatcaagttcaacaaaac
tcccacgaagggtaccacaacaacccgtacaaccactacccgacttaccgacctggctac
ggtaatagtggatatgggatgatgagtccctctcggcaggggaacaacatgatgggccta
ggcagcaacacggctgctgctaatcatagcaaagctgccatggccgctgcctcttctggt
ggtgctaatgttggagggtttcagagatttccagggcaaactcagcaacatccttcgggg
gctactccaactctaaaccagctactgacatccccgagtcctatgatgcggggctatggc
ggtggctatcaagattacactaatccctctgctcaacaacaacaatcaagcatggggctg
accaaagacataaacccccaatacggttcagttacacatgtttggggaggacaacaaaga
aatcaccctgccatgagccctggaaacaacggacaaggaagcggcagatcacaggtgcca
cccatggacgccatggccatgaagcgctctcagctctacggcataggcaacaacccttac
tcccagcaacaacagggcgggggcggttcttaccctggccagccatacggatcgccttct
cctcaccgctatccaatgggaatgcacgggagaggtcaagtgggcatgagtggaatgcag
tatcctcaacagcagcagcagatggtagcccagtatggacagcagcatcaggggcagcag
ggtgggtactgccagccgcagggccaatccccgtacttcagccctccccagcaacagccc
accgcccccacacagcccccctacatgcagccacgcccaccaccaccaccacaacaggat
gtgtcacaggagggctatggcaacaggggccagtctgctatgacccctgagaagcccaac
catgaggagatgggcctcagccagcaggacagaccttccagtctacctgacctgtctggc
accatagatgacctccctacgggcacagaggtggccgtcagctcagcggtcagtgcttcg
gggtccaccagcagccagggcgagcagagtaacccggcccagtcgcctttctcaccccat
gtatccccgcgcctccccggcctgcgcagcggcccctcgccctcccccgtgggatcacct
gttggctccagccaatcacgctctggcccaatctcccccgccagcgtcccaggcacccag
atggccccccagacccctgggaacatgtctgatgtgggctcccattccaccctgagccag
tcccccatgtctcaggagagagggttcccacctgccatgcagaggaacaccccaggcccc
cagcagtcgggccaggggccccccgtgtcccctcacccctccctggggggctccatgcac
ccgggctcctatcatcagcagcagcaggggggccctggcccctcgtacggatcccagacc
agccagtacggcccccaaggtaactaccccaggcccccgaactacggcggggctcccagt
gccaactacagcggccccggccctggcatgagcaacagtttgggcatgaacgccagcagc
cccatgcatggccagggccccggacagccctgtggctccatgcccgccgggcgaggcttg
ggtccaggggccagcgggcgcccctacccctgtgccaccaccaacaccatggcccccacc
tctcccagcatgccgcagcctgccggacagggtcagggcatgaggccgcccatgcccagc
gttaaccgcaagccgggccacgaggcaggccccggccccaacgccatgcagggtccaaac
gctggttccaacccctctgcccagggccggcagggaatgacccccatgccgcaccaccct
ggcatgaaccccatgggccccggaggtgtgggccccagccctggaggcctctacagccag
cagccaggagctaacacctctggaaggatgaccccacaggggccccacccgctctacaac
gcacccccaccctcagggcccatgcagatgggaggagaggggatggtgggtccccctgac
cccaaacggaggcctccagagcagcacagggagggcaacactcctgcccctgccgtcgaa
ccaccacctaaacccaaggaccgctacagctcctctcagtgtatgtccaagccccccacc
ccatgtcccctgtcccccagccctgctagtctgtcctcttgtcatgaggcgcaggacagc
agagatatcattagcagccatcctgctgtcgctggggcctggccaaagacccccaccagc
cctaagcccagcccggccaccatgaccaatgagaagatccgcatcctgtatgagatgggc
ggggagcccgagaggaggatgtgggtggaccgctacctggccttcatggaggagaggggc
acgcccgtacccatgctgcctgccgtgggcaagaagcccctggacctatgccgcctctat
ctgtctgtccgggagataggaggcctggctatggtgaacaagagtaagaagtggagggag
ctgtctacccacctcaacgtgggcacgtccagcagctccgccagctctctgaagaagcag
tacatccattacctgtttgccttcgagtgtaaagtggagcggggagaggagccgccgctg
gagattccgggagaaaccaagaaacaggcccaggcgcaccaggctaggatccagccgccc
tcaccagccaactccggctccctacagggcccccataccccccagtctacaggcagcagc
tccatgagtgagatgccagagggtatgaagcgccccaccccagccaccacaccccacgga
cacatgaccccacagccaggaaacaggaacagtggtggtatccgtgtccaggatcccttc
tcagagatcagtgaccctgccttccacaagcgagggcctatgccctctggcgccccctat
cagcagagtggcggtacttcagacccctccatgagaatgcagtacgacgccaacaaggac
ctctatggagggccccagaaagggccagggggcagtgagtcctatggaccaggtcagatg
cccagcggtgccttgcaggatatgtacccccgtggtcctccctcaggagccatgccaggg
atggggatgggccccggcccgcggccacagtacccctacgggcctggctacgacagaaga
ccagaccatgtgatgggtccagaggggggtatggctccccctgggggtcagaacaatatg
ggaccttccagcggtgaccccagcatgtactctgccaacagataccctcagcagagacca
catggacatgagagttacgggcagcagcaataccctcacggccccatgccttacggctct
caccagcctggaatgtatccacagcaacagggctataagaggccagtaggaccagaggtt
atgtacggtccccctgctaagcgccatgagggtgaggcctacggcatgcagcagtacgga
ggacagcagccaggcatgtacagccagtacggagggaattacatggggccagagcgcagg
cccatgcagggccagtacccttacccctacagccgagaccgcatgggggccactcagggg
ccacagcaacacgccatgatgagtggtgggccccctgcttcttccggagcctctgcagag
ggcccacagcttaacatgtggcaccccaggacagacatgggctaccccgggccttaccgt
ggccaactgggccaggggcccccttaccctggtttgggacggggcccgggggatgaccca
gagggaaggaactccccagatgggcagtggccccccggacctccaggccagcaccagccc
ccgtatccaccccactcctcctctgcctcctccatgcccccaatggcatccagacagccc
acctcctcctaccaatccaaccccgccatggccaaccacatctctagagcccccagcccc
tcgcccttcccccggcccatggggggatccggacccctgtcccccaacaatgggggcccc
tacatggcatctctgaagaaggcagggatgcccggatccatgccaggctcactcggcgga
gggatgtcagggcagggcattctacctctccacagagatatcagcttccccgtggggtca
gtggaggccaccctgcccaaactcaaggccagacgcagacttacctccaaggagaccgga
actccggaggcgtggcgcgtgatgatgtcccttaagtcaggtctgctggcggagagcacg
tgggccctggacaccatcaacatcctgctgtatgacgacaacactgtgtcctccttcacc
ctcgcacagttgcctggcttcctggagctgatcgtggagtacttccgccggtgcctgatc
tccatctttgggatcctggatgagtatgaggtgggcacagagggacagagaacgctgcta
ggaccaatcgcagaccaggaggaagagcctaccattccagagctcgacagccaattacgc
gaagagcagagggataacaggctagaagaggcggagatagagaagcccacagccaacggc
agcacagaggaggcggtcccagacaaaaagacggaggagcctgtcgaggtgactgtgaaa
gaggagaaggtagaaggggaagaatctgaggtgggggcaaccacggagcagtctgagcct
ccccagcccgaggggcccccagagccgaggcccaaacaggccagtaagtacgacaagctg
cctatcaaggtggaggagaagagtgcggaggaggaccaggtggaggagcgccagggactc
agcctgcccaggggcttcaactctggcctgctgcactggaaggctggagggggggactcc
acggcccacatccagacacacttcgagaaacgcagcgaagagacggacagcaagcataca
gaggagaggaaggtggaagaaggggccattgtagagaagaccatgactgagacagccacc
gtggacgatatgctgagtgcccgaccaggctctcagtctctgtcagagaggaacgatctt
actggggcgtactcctttgtaggaggggcgcagacccaaagccctatcttgaccctgctg
gaggacgagcctcgctgctgggacgaggcgcccctctccacggccgaaccctggcaggac
gccctggcccgccgctgtgtctgcgtctccaacatcgtccgcggcctctccttcatccca
gggaatgacaacgacatgtcccgccaccctggcctggtgctgatcctggggcggctggtc
cttctgcatcacctgcacccccagaggaggaggacacctcccagctaccagagggaggag
gagcagggccgggcctgcagcaaggacgagtggtggtgggactgtttgtcagccctcagg
gagaacactctggtcaccctggctaacatctcaggtcaactagacctgtccctctaccca
gagagcatctgtctgcccgtcctggacgggctgctccactggatggtgtgtccctctgcc
gaggcccaggaccccttcaccacggcgggctgctcctcctccctcaccccccagagattg
gtgctggagtgcctgtgcaagctgagcatccaggacaacaacgtggacctcttgctggcc
acgccgccgttcagccgccaggagaagctctacgccaccctggtgcgccacgtgggtgag
cggaagtcccaggtatgccgggagatggcggtggctgtgctctctaacctggcacagggg
gacccgacggcggcgcgtgccatcgctctgcagaagggcagcgtgggaacactcatcggc
ttcctggaggactgcgtggccatggcccagcaccagcagggaccccacagcctgttacac
ccagcaccagtcccccaccccgaaccccccagcgttaacatgatgtgcagggccgccaag
gctctgctggccatggccaaggtgaaggagaaccggccagagtttgttctctacgagagc
aggctactggatagctctctgtcctctgtgctgagctctgccgtggcggccatcatgtgt
gaagtactgtttaagattggacgctcctcgtga
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integrated database retrieval system
