Oncorhynchus gorbuscha (pink salmon): 123995073
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Entry
123995073 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: afadin-like
KO
K05702
afadin
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04517
IgSF CAM signaling
ogo04520
Adherens junction
ogo04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
123995073
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
123995073
04530 Tight junction
123995073
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
123995073
NCBI-ProteinID:
XP_046154330
LinkDB
All DBs
Position
LG14:complement(52021143..52146615)
Genome browser
AA seq
1813 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKMQSNGPEREKEGVIQNFKRTLSKKEKKKEKKREKEAHIPDGD
EQALNREDGENSRLAAEVYKDMPENSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRP
DSGGTLRIYADSLKPNIPYKTILLSTTDMADFAVVEALEKYGLEKENPREYCIARHTDDK
SGKEIVLDDTECPLQIFRDWPNDRGALVFQLKKRPPDYVPKKGRKPEDKGLRGKGMDGPL
YGSLPPEKLPYLVELSPDGSDSRDKPKLYRLQHSVTEVGSDTTDDGSIQLFGPGILPHHC
KLMHTEGLVTVTPHSLEAETYVDGQRVTETTVLRSGATLQFGASHVFKFVDPSYDHSMGK
GGPGPMMRGRHKSGSVSETTFDLQGDIHSGTALPASKSSGKLDMERSANGSERGMVKPMI
RGEQQDGRSQDILSPELTLPASIEFRDNSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTC
RYVMSSHYRPDVSPSERTHKVIAIVNKMVSMMEGVIQEIPEGAQKQKNIAGALAFWMANA
SELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVQCLQSDLNNYMPAFLDDPEEQNPQ
RPNIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNKLAMEADSGLCSHYW
GAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSMQDVQNIHNTCFKLNS
LQLNALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGREVQLEEDPDLQLPFLL
PEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTIHFEGADCDSHFFADNS
DLQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVKGGAAEVDGRLAAGDQ
LLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMPRALQGG
RDKNGKLRPKSEGFELYNNSVQNGSPESPQGDWQAYPEPKKLSGEERLLKNRADHRSSPN
VANQSQSPGGNTVYPGGPGTKITSVSTGNLCADDEPSPPHPEAYPIPTQTYPREYFTIPA
SKSTDRMGPAAGQLYTDDRGPPGSMEDHHNSSIAIQRMGHSQEELCDLPGGYPPAPLRPE
DLVHLQQQQRDADYQRGSGEHWVNHHQVSSSVESSTSSQEHLNYSSNKTQSNHKSGPGRW
KTPGPIAPHPGPVAQATRTDLPPPPPPPVHYQDFDSQPDLPLPPPPSASQQQAAAADRKK
REEQQRWYEKEKARLEEERERKRREQERKLGQVRNPSMCPCPTSPPRPNSRPSSSSPPRP
EKLSTLPRATTLPPQGNPMDTVIRELLPQQQPRTIERRDLQYITISKAALSSSDSLSPDP
WKRDAREKLEKQQQLHIVDLLDREIQDLQAKPERTAEESDRLRKLMLEWQFQKRLQESKQ
SDEEDEEDDDEDVDSMMIMQRLEAEKRARLQDEERRRKQQLEEIRKREAEDRAKQEEERH
WREEERARREVDEKRRQEEEYYTRLEEGRRRQHEEAERKLLTPDEPGLYRPPLPRDYQPQ
PLPPTASPATTATNAPPPPQRNASYLKTQVVSPDALYTAKFVSYNDEEEEDAAGFHSYTG
NTTGVVGSEEGYKDLREKWTKGGQEQENTLTGEAPESMTFKERQRLFSQGKEVSNKVKAS
RKLMELENELNTK
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagcggcggaaactagctgacatcattaaccactggaac
gccaaccggctcgacctgttcgagatcagccaacccaccgaggacttggagttccacggc
gtgatgcgtttctacttccaggaccgcgtggcggggaactttgccaccaagtgcatccgc
gtgtcctccacggccaccactcaggacgtcatcgagacgctggccgagaagttccggccc
gacatgagaatgctctcctcgccaaaatactccctctacgaggtccacgtcagcggggaa
gaacggaagctggacctggatgagaagccactggtggtgcagctcaactggaacaaagac
gaccgcgagggacgcttcgtcctcaagaacgagaacgacatcatccccaagaagatgcag
agcaacgggccggagagggagaaggagggagtaatccagaacttcaagcggacactgtcc
aagaaagagaagaagaaggagaagaagagagagaaggaggctcacattccggacggagat
gagcaagcactgaacagagaagatggagagaactccagactggcggcggaggtgtacaag
gacatgccggagaacagcttcaccaggaccatctctaaccctgaggtggtgatgaagagg
aggcggcagcagaaactggagaagaggatgcaggagttccgcagcagcgacggcaggccc
gactcgggggggacgttgaggatctatgcagacagtctgaagcccaacattccttataag
accatcctgctgtcaacgacagacatggcagactttgctgtggtggaggccctggagaag
tacggcctggagaaggagaacccccgggagtactgcatcgccaggcacacagatgacaag
tctgggaaggagatcgtcctggacgatacggagtgtcctcttcagatcttcagagactgg
cccaacgaccgaggagccctcgtgttccagctgaagaagagacctcccgactacgtgcct
aagaagggccggaaaccagaggacaagggcctcagaggaaagggcatggacgggcccctg
tacggctctctacccccagagaaactgccgtacctggtggagctcagcccagacggctcc
gactccagggacaaaccgaagctctaccgtctgcagcacagtgtcactgaggtgggctca
gacacgacagacgacggctccatccagctgtttggtccaggtatcctgccccaccactgc
aaactgatgcacacagagggtctggttacagtgacgccacacagtctggaggctgagacc
tacgtggacggccagcgtgtcaccgagaccaccgtgctgcgaagcggagccacacttcag
ttcggtgcctcccatgtcttcaagtttgtggaccccagctacgaccacagcatgggcaag
ggaggtcccggaccgatgatgagaggaaggcacaagtcagggagtgtttctgagactacc
tttgacctgcaaggggacattcacagtgggacggccctccccgccagcaagagctcaggt
aagctggatatggagcgttcagccaacggcagcgagagaggcatggtcaaacccatgatc
cgcggggagcagcaggatggcaggtcccaggacatcctgagcccagaactgacgctgccg
gccagcatcgagttcagggacaactccgaagatgcctttctgtcggctatcatcaactac
accaacagctccacggtgcacttcaagctgtcccctacctacgtactatatatgacctgt
cgctacgtcatgtccagccactaccggcccgacgtcagtccctcggaacgcactcacaag
gtcatagccatcgttaacaagatggtgagcatgatggaaggagtcatccaggagattcct
gaaggggcccagaagcagaagaacatcgcgggggccctggccttctggatggccaatgcc
tcagagctactcaacttcatcaaacaggacaaggacctgtcgcgcatcacactggacgcc
caggacgtgctggcacacctcgtccagatggccttcaagtacctggtccagtgtctgcag
tctgacctgaataattacatgcctgcgtttttggatgacccagaggaacagaaccctcag
aggcccaacatagaggacgttctgcacaccctgacgggcgccatgtcgctgctgcgccgt
tgccgtgtcaacgcggcgctgaccattcagctgttctcgcagctcttccacttcatcaac
atgtggctgttcaacaagctggcgatggaggccgactctgggctgtgttcacactactgg
ggagccatcctccgccagcagctcagccacattgaggcctgggcagagaaacagggcctg
gagctggccgccgactgccacctcagtcgcatcgtacaggctacgactctcctcaccatg
gacaagtactccatgcaggacgtgcagaacatccacaacacctgcttcaagctgaactcc
ctgcagctcaacgccctcatgaccaactaccactgtgctcccgacgagccttacatcccc
cccgagctgatagaccacgtggttgccgtggcagagaacacggcagatgaactggcccgt
agcgacggccgagaggtccagctggaggaggaccccgacctgcaactgcccttcctactg
cccgaggacggctactcctgcgacgtcgtgcgcaacattcccaacggattccaggagttc
ctggaccccctttgtcagagaggattctgtcggctaacccctcacccccgctcccctggg
acctggaccatccactttgaaggagccgactgcgacagccacttctttgcagacaactcc
gacctgcaaatgcggaaggaaccggaagttgtgacggtcaccctgaagaagcacaatggc
atgggcctcagcattgtggctgccaagggtgctggacaggacaagctcgggatctacatc
aagtctgttgtgaagggaggtgcggctgaagtggacggtcgtctggctgcaggggaccag
ctgctgagtgtggacggccgcagcctggtgggcctctcccaggagagggctgcagagttg
atgacgaggacaggctctgtggtgacactggaagtggccaaacagggtgctatttaccac
ggcctggccacactcctcaaccagccttctcctatgatgcccagagcgttacaaggaggg
cgtgataagaacggtaaactgagaccaaagagtgaaggctttgaactgtacaacaactca
gtccagaacggctctccagagagcccccagggtgactggcaggcctacccagaaccaaag
aagttgagcggggaggagagactactgaagaaccgggccgaccaccgctccagccccaac
gtggccaaccagagtcagagtccaggaggaaataccgtctacccaggaggacctgggaca
aagatcacctccgtctccacgggcaacctgtgtgctgatgacgagccctctccacctcat
cccgaggcctacccaatccccactcagacctaccccagggaatacttcaccatcccagcc
tccaagtctacagaccggatgggcccggccgcggggcagttatacactgacgacaggggc
cctcctggctccatggaagaccaccacaacagcagcatcgccatacagcggatgggccac
tctcaggaggagctgtgtgacctcccagggggctaccctccagcccccctgcgtcctgag
gacctggtccacctgcagcagcagcagagagacgctgactaccagcggggcagtggggaa
cactgggtcaaccaccaccaggtctcctcctccgtggagtcctccacctccagccaggaa
cacctcaactactcctctaacaagacccagagcaaccacaagagtggcccaggacgctgg
aagacccctggccccatcgccccgcacccaggccccgtggctcaggccacacgcacagac
ctcccaccccctccaccgccccctgtacactaccaggactttgattcccagcccgacctg
cccctacccccccctccctctgcctcccagcaacaggcagcagccgccgaccgcaagaag
cgcgaggagcagcagcgctggtatgagaaggagaaggcccggttagaggaggagagggag
aggaagaggagggaacaggagaggaagctgggacaggtccgtaacccatccatgtgccct
tgccctacttccccccccaggcccaacagcaggcccagcagcagcagcccccccaggcct
gagaaactgtccactctgcccagagcgacaactctgccccctcagggtaacccaatggac
acagtgatcagagagctgctcccccagcagcagccccgcaccatcgagcgccgggatctg
cagtatatcaccatcagcaaggcggcgctgtcctccagcgacagcctgtccccagacccc
tggaagagggacgcccgggagaagctggagaagcaacagcagctgcacatcgtagacctg
ctggacagggagatccaggacctgcaggccaagccggagcgtacggccgaagagagcgac
cggctcaggaagctgatgctggagtggcagttccagaagagactgcaggagtccaagcag
agtgatgaggaagatgaggaggatgacgacgaggacgtggactccatgatgatcatgcag
cggctggaggcggagaagagagcaaggttgcaggatgaggagcggcggcggaagcagcag
ctggaggagatccgtaagcgcgaggcggaggaccgggccaagcaggaggaggagagacac
tggagagaggaggagagggccagacgagaggtcgatgagaagaggaggcaggaggaggag
tactacacacgtctggaggaagggcggcgccggcagcacgaggaggccgagcgcaagctg
ctgacccctgacgagcctggtctgtacagacctcccctccccagggactaccagcctcag
cccctccctcccactgcatcccccgcaaccactgccactaacgctccaccaccccctcag
agaaacgcatcctacctcaaaacccaggtcgtctcccctgacgccttgtacactgccaag
tttgtctcgtacaatgatgaggaggaggaggacgctgcaggatttcattcatacactgga
aacacaaccggggttgtaggatcagaagaaggttacaaggacctgcgagagaaatggaca
aaaggtggtcaagaacaggaaaacactttaactggagaagcgccagagagtatgaccttc
aaggagcgccagcggctcttttcccaagggaaggaggtgtctaacaaagtcaaggcctca
cggaaactcatggagctggaaaatgaactcaatacaaagtag
DBGET
integrated database retrieval system
