Oncorhynchus gorbuscha (pink salmon): 123997180
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Entry
123997180 CDS
T07892
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123997180 (lingo3a)
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
123997180 (lingo3a)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
Ig_2
LRR_LRWD1
Cupin_1
LRR_6
LRRNT
LRR_9
V-set
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
123997180
NCBI-ProteinID:
XP_046157269
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Position
LG15:37744669..37786876
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AA seq
606 aa
AA seq
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MAAGPGMGWPGLLLLLMTTVASTQSQGCPQRCECMAKLKSVACQGKRLSALPDSISSDTR
LLDMSGNMLRWVEHGDLLSYPRLEELDLSENIISVLEPNAFSSLQNLRVLSLRGNQLKLV
PMGAFSHLTNLTTLDLSGNKIVILLDFTFQDLKSLRNLEVGDNDLVYISNKAFLGLVGLR
QLTIERCNLTSISSQSLSYLRSLVTLRLRYLSISSLDDQNFRKLGGLRGLEIDHWPFLEH
ISPHSLQGLNLSWLSITNTNITSVPTAALRSLAHLTSLNLSYNPISVLESWALRDLVRLK
ELHLVNTNLMTVQPYALGGLRQIRLLNLSTNALVTLEEGAFQSVNTLETLRVDGNPLSCD
CRLLWILQRRKTLNFEGKSPVCAGPMEVQGRALSAFSDSALFDHFTCQKPKIRNRKLQPV
TAREGQVVSFVCRAEGEPTPIIFWVSPQRRRITTKSTGRVIVLPEGTLEIRYAQVTDSGT
YICIASNAGGNATYFATLTVSALPLDAALMANRTYYTGDLNETNLNDTKVFLKFTLDLKT
ILISTAMGCCLFLGVVVFCFLMLFAWSRGRGQHKNNFSVEYSFRKVDGPAASGGQGGARK
FNMKMI
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggtccaggcatggggtggcctggcctgctcctgctgctgatgactactgtg
gcctccactcagagccaaggctgtccccagcgctgtgagtgcatggccaagctcaagtct
gtggcctgccaaggcaagcgcctgtctgccctccccgacagcatctcctcagacacacgc
ctgctggacatgagtgggaacatgcttcgctgggtggagcatggcgacctcctctcctac
cctcggctggaggagctagacctgagtgagaacatcatcagtgtcctggagcccaacgcc
ttctctagcttgcagaacctgagggtgctgtcgctgagggggaaccagctcaaactggtc
cccatgggcgccttctcacacctcaccaacctcaccacactagacctgagtgggaacaag
atcgtcatcctgttggacttcactttccaggatctaaagagcctgaggaacctggaggtt
ggcgacaacgacctggtctacatctccaacaaggcattcctgggcctggtgggtctgagg
cagctcaccattgagaggtgcaacctgacctccatctccagccagtctctctcctacctc
cgcagcctggtcactctgcgcctgcgctacctcagcatctcctccctggatgaccagaac
ttccgtaagctgggcgggctgcggggtctggagatcgaccattggcccttcctggaacac
atctccccccacagcctccagggcctcaacctgtcttggctgtccatcaccaacactaac
atcacctctgtgcccacagccgccctacgcagcctggcccacctcaccagcctcaatctc
tcctacaatcccatctcagtgctggaatcctgggcccttagggacctggtccggctgaag
gagctacacctggtcaacaccaacctgatgacggtgcagccgtacgcccttggtggcctt
cggcagatccgcctgcttaacctgtccactaacgccctggtaaccctggaggagggtgcc
ttccagtctgtcaacaccctggagacgctgcgtgtagatgggaaccctctgtcctgtgac
tgccgcctgctttggattctccagcgcaggaagaccctcaactttgaagggaagtcccca
gtgtgtgcgggacccatggaggtgcagggcagggccctcagcgccttctcagactctgcc
ctctttgatcactttacctgccagaagcccaagatacgcaacaggaagctgcagcctgtg
actgccagggagggccaggtagtgtcctttgtgtgccgggcggagggagagcccacacct
atcatcttctgggtatctccccagcgccgtcggatcactaccaagagcactggacgtgtc
atcgtcttacctgagggaacgctggagatccgctacgcccaggtgactgacagcggcacc
tacatctgcatcgccagcaatgccgggggtaacgccacctactttgccacgctgaccgtg
agcgcgctgcctctggacgcagcgctcatggccaaccgcacatactacacaggtgacctc
aacgagaccaatctgaacgataccaaggtcttcctcaagttcaccttggacctcaagaca
atcctgatatccacagccatggggtgttgcttgttccttggtgtggtggtcttctgtttc
ctgatgctgttcgcatggagccggggcagggggcagcacaagaataacttctcagtagag
tactccttcagaaaggtagatggccctgctgccagtggcggacagggaggggcccgtaag
ttcaacatgaagatgatttga
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