Oncorhynchus gorbuscha (pink salmon): 123997361
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Entry
123997361 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
123997361
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ogo04515
]
123997361
04090 CD molecules [BR:
ogo04090
]
123997361
04091 Lectins [BR:
ogo04091
]
123997361
Cell adhesion molecules [BR:
ogo04515
]
Immunoglobulin superfamily
VCAM
123997361
CD molecules [BR:
ogo04090
]
Proteins
123997361
Lectins [BR:
ogo04091
]
I-type lectins (Siglecs)
123997361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
C1-set
V-set
ICAM1_3_5_D2
ICAM_N
REJ
DUF2550
Motif
Other DBs
NCBI-GeneID:
123997361
NCBI-ProteinID:
XP_046157457
LinkDB
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Position
LG15:44808748..44815766
Genome browser
AA seq
741 aa
AA seq
DB search
MYLILLWVLILPVTAFAFHMELKPKNALLKVGDRHELQCSVKDCNEKVTISWALLEDKPV
FAKIHTSGSESVAVFDPVATAHDDTLLCKGSCGESTKQQRAVVKVYSFPEAPVISGHDRL
LLGQTNTLTCEVTDAYPAEHLRLEWLRGDSVLQTDAESVVSTYTFTPTHEDKQASITCRA
THDQEGVPDDEKTKETSVSLTVLYAPQITSISELTVVRVGSSPTLMCHAEGNPRPEIQWK
AIGPHGQAVIVGQSEELVLTEMTLVDSGQYECVASNTIGNSTASMNVIVEAPPTNTSIKV
SPASKVKEGENVTVSCLSDGAPVRRMVLRRLSEDQDVALQSSNGSSTSFTLSSALLADSA
LYQCEAFNEHGSQKVSTLLSVEAYPLEVEMVSGVMAEMGSKLVLSCLASGCPQPAFSWRS
MLDMPVHSRARNQDSLSQLHLGPLGLAHEQAYTCEAKCGSVIKSKQAEVKVFSFPSDPII
ENPGPFLEDGEATLYCSVADVYPASHVQIQWLDGETELHSGVGRYSSELQNVTSMLSFSV
EPEDQGRRITCRVGLQMDVVHQSRRERKAATVLELHYAPRRTTITVSPASEVKEGESVTV
SCLSDGAPVGWMVLRRLSEDQDVKLQSHNGSSTSFTLSSALLADSALYQCEAFNEHGSQK
ASTHVTVKAPPRNTTVLVYPSTEVQEGQNVTVCCRSVSFPPPXGGFEKTGQWHRALLPGW
ELPAGEPYAQRYRPIPGECDQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcattctgttatgggtattgatactaccagtaacagcatttgcatttcatatg
gagctgaaaccaaagaatgcgcttttgaaagtcggtgataggcatgagctgcaatgctcg
gtgaaggattgcaatgaaaaggttaccatctcctgggctttgctggaggacaagccagtg
tttgcgaaaatacacacctccgggtcggaatcagtggcggtctttgaccctgtggcgaca
gcacacgatgacacacttctctgcaaaggcagttgcggagaatcgaccaaacaacagcgt
gcggttgtcaaagtatactcatttccagaggcccctgtcatatcaggccatgaccgactt
ctcttgggccagaccaacactttgacatgtgaggtgacggatgcttatcctgcagagcac
ctgaggcttgagtggctgcgaggagacagcgtgctccagacagatgcagagtctgttgtg
tccacctacacgttcacgcccacccacgaggacaaacaggcgagcatcacatgcagagcc
actcacgatcaggagggtgtgcctgatgatgagaagaccaaggaaacctctgtttctctc
acagtgctttatgcaccacagattacgtcaatatctgaattgactgttgtgagagttggc
tccagtcccacattgatgtgccatgctgaagggaaccccagaccagagatacagtggaag
gccattggtccgcacggacaggctgtcatagtagggcagagcgaggagcttgtccttaca
gagatgacactggtggattctggtcaatatgagtgtgtggcaagcaacaccattggaaac
agcacagccagcatgaacgtcattgttgaagctcccccaacaaacacctccatcaaagta
agcccagccagtaaggtgaaagaaggggagaacgtgacggtgtcctgcctgtcagacgga
gctccggtgagacggatggtgctgaggagactctctgaggaccaggatgtagctcttcag
tccagcaacggctcctccacctccttcaccctctcctctgccctgctagcagactctgct
ctctaccagtgcgaggccttcaatgagcacggcagccagaaagtcagcaccttgctctcc
gttgaagcgtatcccctggaggtggagatggtatcgggggtgatggctgagatgggatcc
aaactggtgctctcctgcctggcttcgggctgtccccagccagccttctcctggaggagc
atgctggacatgcccgtccacagccgcgcacgcaaccaggactccctctcccagctccac
ctgggcccacttgggctggcccacgagcaagcctacacctgtgaggccaagtgtggctct
gtcatcaagtccaagcaagcagaggtcaaggtcttctctttcccctcggaccctatcatc
gagaacccgggaccctttctggaagacggggaggccaccttatattgttctgtagccgat
gtctacccagccagtcacgtgcagattcaatggctcgatggggaaacggagctgcactcc
ggcgtgggtcggtactccagtgagctccagaatgtgacgtcaatgttgtctttttcggtg
gaaccggaggaccaggggagacggatcacctgcagagtcggtcttcagatggacgtggtc
catcaaagtcggagagagaggaaagcggcgactgtactggagctccactatgcccccagg
agaaccaccatcacagtgagcccagccagtgaggtgaaggaaggggagagcgtgacagtg
tcctgcctgtcggatggcgctccagtgggatggatggtgctgaggagactctctgaggac
caggatgtaaaactccagtcccacaacggctcctccacctccttcaccctctcctctgcc
ctgctagcagactctgctctctaccagtgtgaggccttcaatgagcacggcagccagaaa
gctagcacacacgttacagttaaagcacctcctaggaatacaacagtcttggtctatccg
tccactgaggttcaggagggccaaaatgtcaccgtatgctgtcgctctgttagcttcccc
ccacctngtggtggttttgagaaaactggacaatggcacagagctctactccccggatgg
gaacttcctgctggtgaaccttacgcccaaagatacaggcctataccaggtgaatgtgac
caatga
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