Oncorhynchus gorbuscha (pink salmon): 123997771
Help
Entry
123997771 CDS
T07892
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123997771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
123997771
03036 Chromosome and associated proteins [BR:
ogo03036
]
123997771
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123997771
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123997771
PBAF complex
123997771
GBAF(ncBAF) complex
123997771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
Motif
Other DBs
NCBI-GeneID:
123997771
NCBI-ProteinID:
XP_046158273
LinkDB
All DBs
Position
LG15:complement(64966628..64986443)
Genome browser
AA seq
1106 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPMGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVHDMEQKQANK
LKDIIKRHQGSISEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMINFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLETSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTAPPSLSVTVE
PAETEKVDTDSDSQQPDKAESKDEAEKPSESAEKLAEGQKVKSETAEPSEREEGASEGGE
SKATADKDKEAAMETSEEDKEKAEQEAMEEEEEERKKLEPDGGEGNIATAAAAALASAAT
KAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTER
QAFHMEQLKYAEMKARQQMEQQQANTVAQGPAPHHGPPGPGMHHGPSHHGPPPAMHSGHG
PPGPGFHPMGPHHPQQTGPMGGPSQPMPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGP
SPVQADGMPPASVGPQAAAPARVADS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggccct
atgggcgtcggtactgcggtgggccgtaaaaaggatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgactcggtgcgccaatggatcggaaaacactac
aaaaagtatgtccaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaggatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcggggggtgctctgtgtcacatcctgggc
tctacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccttcc
aggatggacaggaatgtagagatgttcttgaatgtagagaaaaccctggttcagaataac
tgcctgactcggccaaccgtattcctggtgcatgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcagtgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtacactggggcatgtacccagacagttatgacacctgg
gtgtccaccagcgacgtggaaggggatgtggaggacccacccatctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacacagacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtctcgcaagaagggtggc
aagaaggggaatcctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctctcctgttcccagtatggaggag
gtcactttgcccaagaacgtgaaccctaagaaagatagcgagaacaccccagtgaaggga
ggggcagtggctgacttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccatgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagagatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctaaccggagacgtgtgtgccgtc
atgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccggcccctccccatgggccccccgcccaccccccacttcaatgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgtcccccacagatcccctctggccagcagatg
atcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctactggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagacctctgagtcgtccctgggccccctggcctac
cagccggtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggatccccgtgtggcctctgccgctgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgcccctccttctctctctgtcactgtagag
ccagcagagaccgagaaggtggacacagactccgactcccagcagcctgacaaggctgag
tctaaggatgaggcggagaagcccagtgagtctgctgagaagctggccgagggacagaag
gtgaagagcgagacggccgaaccgtctgaacgggaggagggagcgagtgagggaggagag
agcaaggctacagcagacaaagacaaggaggcggccatggagacctcagaggaggacaaa
gagaaggcggagcaggaagcgatggaagaggaggaagaggagaggaagaagctagagccg
gacggaggggaggggaacattgccactgcagccgccgctgccctcgcgtcagctgccacc
aaggccaagcacctggcggcagtggaggagaggaagatcaagtctctggtggctctgctg
gtggagactcagatgaagaagctggagatcaagctcagacactttgaggagctggagacc
atcatggaccgagagaaagaggctttggagttgcagaggcagcagctgctgacggagcgc
caggccttccacatggagcagctgaagtatgctgagatgaaggctcgccagcagatggag
cagcagcaggccaacacagtggcccagggccccgcaccccaccatggtcccccagggcca
ggcatgcaccacggaccctcccaccacggaccccctcccgccatgcactccggacacggc
cctcccggacccgggttccaccccatgggtccccaccacccgcaacagaccggaccaatg
ggagggcccagtcaacccatgccaggacgcatgatgcctggcggcccccccactggcagc
atgcctcccatgatgggtccccgccaccctggagcccccaacggcatgtaccctggcccc
tcgcctgtacaggctgatggtatgcccccagcatctgtgggacctcaagcggcagcccca
gcacgagttgctgacagctaa
DBGET
integrated database retrieval system
