Oncorhynchus gorbuscha (pink salmon): 123997888
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Entry
123997888 CDS
T07892
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ogo03009
]
123997888 (dcaf13)
04121 Ubiquitin system [BR:
ogo04121
]
123997888 (dcaf13)
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
90S particles
Other 90S particles
123997888 (dcaf13)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
123997888 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
eIF2A
Motif
Other DBs
NCBI-GeneID:
123997888
NCBI-ProteinID:
XP_046158510
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All DBs
Position
LG15:69006393..69020874
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPSLHPFEVPREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCMAKHPKSLSTMLSGSCDGELKVWNLTKRECVRTLQAHEGFVRGMVVRFC
GTSFFTVGDDKTIKQWKMETPGYGEEEEPLNTILGKSVFTSIDHHQKEGVFVTCGQQVDI
WDEQRSSPIRSFSWGVDSFSCVRFNPVEPELLASCASDRSIVLYDMREATPLKKVIMNMR
SNTLCWNPMEAYNFTCSNEDYNLYTYDMRYLDTPFTVHMDHVSAVLDVDYSPTGKEFVSA
SFDKTIRIFPKDSGHSREVYHTKRMQHVISIKWSSDNKYILSASDEMNIRLWKANAAEKL
GLLAPREKAAVNYSQKLKEKFQHHPQIRRISRHRHLPKSIYSQSKELRVMKEARRRKERN
VRKHSKPGSMPVVTEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaagtcctctccaggaatccggacgactatgtccgtgagacgaagttggat
atccagcgtgtaccacgaaattacgacccgtccctccatccgttcgaggtgccaagagaa
tacacccgtgcactgaatgccaccaagctggagcgcgtgttcgccaagccgttcctggct
tctctggacggccacagggatggggtgaactgcatggccaagcaccccaagagcctctcc
acaatgctgtccggctcctgcgatggagagctgaaggtgtggaatctaaccaaacgtgag
tgtgttcgtacactccaggcccatgaaggctttgtcagggggatggtcgtccgcttctgt
ggcacctccttctttacggttggtgatgacaagactatcaaacagtggaagatggagact
cctggctacggagaggaagaggaacctctcaatactattcttgggaagtctgtgttcacc
agcatcgaccaccaccagaaggagggtgtgtttgtgacatgtggccagcaggtggacatc
tgggatgagcagcgcagcagccccatccgctccttctcctggggcgtggacagtttcagc
tgcgtccgcttcaaccctgtagagcctgaacttctagcaagttgtgcctctgacagaagt
attgtgctgtatgacatgagggaagctacacctcttaaaaaggtaatcatgaatatgagg
agcaatactttgtgctggaatcccatggaagcttataactttacctgctctaatgaagat
tacaatctgtacacatatgacatgaggtacctggacacgcctttcaccgtccacatggac
catgtctcagccgtgctggatgtagactattctccaactggtaaggagtttgtctcggcc
agctttgacaagaccatccgcatcttccccaaagacagtggccacagcagggaggtgtac
cacaccaagcgcatgcagcacgtcatctccataaagtggtcgtcagacaacaagtacatc
ctgagtgcttcagatgagatgaacatcagactgtggaaggccaacgctgctgagaagtta
ggattgctggctcctagggagaaggcagctgtgaactacagccagaagctgaaggagaag
ttccagcaccaccctcagatccgccgcatctcgcgccaccgccacctgcccaagtccatc
tacagccagagcaaggagctgcgtgtcatgaaggaggctcgccgcaggaaggagaggaac
gtacgcaagcacagcaagcctggctccatgcccgtggtgacggagaaagagaaacatgtg
gtcaccgtggtgaaatag
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