Oncorhynchus gorbuscha (pink salmon): 123998069
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Entry
123998069 CDS
T07892
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123998069
09123 Folding, sorting and degradation
03018 RNA degradation
123998069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123998069
03041 Spliceosome [BR:
ogo03041
]
123998069
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123998069
mRNA degradation factors
5'-3' decay
Lsm complex
123998069
Spliceosome [BR:
ogo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123998069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
123998069
NCBI-ProteinID:
XP_046158895
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Position
LG02:17669133..17672836
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQEKKPASGKPQGVKNQH
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacctggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgtgggcgaggaggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggaatgccaggagtgggcagaggccagcagcaggagaagaagcctgctagtggt
aaacctcagggagtcaagaaccagcactga
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