Oncorhynchus gorbuscha (pink salmon): 123998260
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Entry
123998260 CDS
T07892
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
123998260
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ogo03310
]
123998260
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
123998260
Nuclear receptors [BR:
ogo03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
123998260
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
TPR_IFT122
Motif
Other DBs
NCBI-GeneID:
123998260
NCBI-ProteinID:
XP_046159265
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All DBs
Position
LG15:complement(83686811..83723807)
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AA seq
528 aa
AA seq
DB search
MARERTDGERRERERERSRQGQFDSDCELRLRVTTRKRERNRVCESGTRRLRSGVKMMRA
QIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQLPSVSYSCSRQSNCPIDRASRNRCQ
SCRLQKCVTQGMSRDAVKFGRMSKRQRESLRAEVERHRQQQQQHLQAEAQPALSYPSKAC
RFRTPHLLQAPAPAYSFPGEPELPPCPTDVLPYLVCSPGESQAPGLAYQGSCVSPGSGHS
DERGFDSRQPSPDQSIGMGIRSYDPEDPYCPYPPSQSLLHIEELCDSIVRSHRDTSQFRL
EELQALRWKLFSREEIHAYQSKSVDEMWQHCAVRLTEAVQYVVEFAKRIPGFRGLGQNDQ
ITLLKTGSMEVVLVRMSRCFNTENSTVFFDGKFGSTELFKSLGCGDLMVAVFDFAHSVCA
LRLTEQQMALFSSLVLINADRPCLEDRGRVHRMRRDLEECLSHMLRRDNQESLQHKLYQK
VSVLRSLCSLHVEKLHWFSQRYPLTVHSVFPPLYKELFTSDLPSVDSL
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagaaaggacagacggagagagaagagagagagagcgagagagatcaagacag
ggacaatttgacagtgattgtgaattgaggctgagggtgacaacaagaaagagagagaga
aatagagtttgtgaaagtgggacaagaagactgagaagtggagtgaagatgatgcgagct
cagattgaggtgattccctgtaagatctgtggtgataaatcatcaggagttcactatgga
gtcatcacctgcgagggctgcaagggttttttccggcgtagccagctgccgtccgtgtcc
tactcctgttccagacagagtaactgtcctatagacagagccagccgcaaccgctgccag
agctgccgactgcagaagtgtgtgacccagggcatgagccgggatgcggtgaagtttggt
cggatgtcgaaacgtcagcgggagtctctgcgtgccgaggtggagagacaccgtcagcag
cagcagcagcatctccaggcagaggcccagcccgccctgtcctaccccagcaaggcatgc
cgtttccggacaccccacctgctccaggccccggcaccagcctactccttccctggagag
ccagagctgccaccctgcccgaccgatgtgctcccctacctggtgtgctccccaggcgag
tcccaggctccaggtctggcctaccagggctcctgtgtgtctcctggtagtgggcactca
gacgaaagagggttcgactcccgtcagccgtctcctgaccagtcgatagggatgggaatt
agatcgtatgacccagaagacccttactgcccttaccccccctcccaatccctgctacac
atagaggagctgtgtgacagtatcgtgcggtcccatagggacaccagtcagttcagacta
gaggaactacaggctctgagatggaagttgttcagcagagaggagatccatgcttaccag
agcaagtcagtagatgagatgtggcagcactgtgccgtgaggctgactgaagcggtacag
tacgtggtggagtttgccaaacgcatcccagggttccgtgggcttggacagaacgaccaa
atcaccctgctcaagactggatcgatggaggtggttctggttagaatgagcaggtgtttt
aacacagagaacagcaccgtcttcttcgatgggaagtttggcagcactgaacttttcaag
tctctgggctgtggtgatctgatggtggcggtgtttgacttcgctcacagtgtgtgtgcc
ctgagactgactgagcagcagatggctctcttcagctcactggtgctcattaacgccgat
cgcccctgtcttgaggatagaggcagagtacatagaatgagaagagacttggaggaatgc
ctcagccacatgctacgcagagacaaccaggagagccttcagcacaagctctaccagaag
gtgtcagtgttgcggtctctgtgcagtcttcatgtggagaagctgcactggttcagccaa
cgctacccgctcaccgtccactctgtcttccctcctctatacaaggagctgttcacctct
gacctgccttctgtggactccctgtga
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