Oncorhynchus gorbuscha (pink salmon): 123998623
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Entry
123998623 CDS
T07892
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04142
Lysosome
ogo04144
Endocytosis
ogo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123998623
04142 Lysosome
123998623
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
123998623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123998623
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
123998623
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
123998623
Exosome [BR:
ogo04147
]
Exosomal proteins
Proteins found in most exosomes
123998623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
123998623
NCBI-ProteinID:
XP_046159622
LinkDB
All DBs
Position
LG16:63081029..63144835
Genome browser
AA seq
1680 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDAEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALSNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELMEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYASESKDTELAEELLGWFLM
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLSKVDKLETSESL
RKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGYPQAPQAQPGFGYSM
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattctgcctatccgctttcaggagcacctgcagctccaaaacttggggatc
aacccggccaacatcgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgagagaaggtgggcgagcaagcgcaggtggtgatcatagacatggccgaccccaacacg
cccatccgcaggcctatctctgcagacagcgccatcatgaaccccgcctccaaagtcatc
gcacttaaagacgccgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgaccgacgacgtcaccttctggaagtggatctccctcaacacagtg
gcacttgtaactgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgtactgat
gccaagcagaagtggctgctgctcatcggcatctccgcacagcaaaaccgtgtggtgggt
gccatgcagttgtactctgtggacagaaaggtgtcacagcccatcgagggccacgctgcc
ggcttcgcccagttcaaaatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggccggaggaaagttgcacatcattgaggtgggcaccccacccacaggg
aaccagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgac
ttccctgtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtacgacctggagactggcacctgcatctacatgaacaggatcagc
ggggagaccatctttgtcacggccccacacgaagccaccgctgggatcatcggggtcaac
aggaaaggacaggtcctgtcggtgtgtgtggaggaggagaatatcatcccctacattacc
aatgtgctccagaacccagacctggccctgcgcatggctgttcgtaacaatctagctggg
gccgaggagctgttcgcacgcaagttcaacaacctgtttgctgggggaaactactctgag
gctgccaaggtggctgccaacgcaccaaagggtatcctgcgtactccagacactatccgt
aagttccagagtgtgccagcccagccggggcagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtccctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggaatgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctcagtctac
ctgagggccaacgtacccaacaaggtcatccagtgctttgctgagaccggacagttcccc
aagatagtcctgtatgccaagaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgaggatcagtccagaacagggcctgcagttctcacagatgctggtccaggac
gaagagcctctggctgacatcacacagattgtggatgtgttcatggagtataacctgatc
cagcagtgtacctcattcctattggacgccctgaagaacaacaggccatctgaggggccg
ctgcagacacgcctactggagatgaacctcatgcatgccccacaggttgctgatgctatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccaactgtgtgagaag
gctggcctgctgcagagggctctggagcactacaccgacctatacgacatcaagcgggcc
gtggtgcacacacacttgctcaacccagagtggctggtgaatttctttggctccctctca
gtggaggactctctagagtgcctgagggccatgttgtctgccaacattcgtcagaacctg
cagatttgtgtccaggtggcctccaagtaccacgagcagctctccaccaactccctcacc
gagctcttcgagtccttcaagagctttgagggtctgttctacttcctgggttccatcgtt
aacttcagccaggatgcagaggtccacttcaagtacatccaggctgcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgacccagaacgagtc
aagaacttcctcaaggaggccaagctcaccgaccagctcccgctcatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacctgtaccgcaacaacctgcagaaatac
attgagatctacgtgcagaaagtgaaccccagccgtctgccggtggtgattggagggctt
ctggacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgatgaactggtggccgaggtggaaaagaggaacaggctgaagcttctcctg
ccctggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctg
gccaagatctacatcgacagtaacaacaaccctgagcgcttcctgcgtgagaacccctac
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtt
gcctacgagagaggacagtgtgaccaggaactcatcaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggtacgtcgcagggacccggacctgtgggccagcgtg
ctgctggagacgaaccccttcagaagaccactcatcgaccaggtggtgcagaccgcccta
tctgagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ttgcccaatgaactcattgagctactggagaagatcgtactggataactccgtcttcagt
gaacacagaaacctgcaaaacctgctgatcctgacggccataaaggcggaccgtacccgt
gtgatggagtacatcaaccgcctggataattatgacgccccggacatcgccaacatcgcc
atcagcaacgagctcttcgaggaggcattcgctatcttcaagaagtttgacgtcaacaca
tccgctgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagttcgca
gagcgttgcaacgagccggccgtgtggagccagctggctaaggctcagctgcagaagggc
ctggtcaaggaggccattgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggccgccgaccagagtggtaactgggaggacctagtgaagttccttcagatg
gcccgtaagaaggcccgggagtcctatgtggagacagagcttatctttgccctggccaag
accaaccgcctggctgagctggaggagttcatcaacggacccaacaacgcccacatccaa
caggtcggcgaccgctgttatgacgagaaaatgtacgatgcggccaagttactgtacaac
aacgtgtccaacttcggccgcctggcgtccaccctggttcacctcggggagtaccaggcg
gcggtagacggggcgcgcaaggccaacagcactaggacctggaaggaggtgtgcttcgct
tgcgtggatgggaaggaattccggctggcccagatgtgtggcctccacatcgtggtgcat
gctgatgaactggaggaactcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggagcgggcgcacatgggcatgttcactgag
ctggccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaatattccaaaggttctgcgggcggcggagcaggcccacctgtgggcg
gagctggtgttcctgtacgacaagtacgaggagtttgacaatgccatcatcaccatgatg
aaccaccccacagacgcctggaaggagggccagttcaaagacatcatcaccaaggtggcc
aacgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcatagtgctgtcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaac
aacaagtctgtcaatgaagcacttagcaacctcttcatcacagaagaggactatcaggct
ctgaggacgtctatagatgcctatgacaacttcgacaacatctcgctggcccagcgcctg
gagaaacacgagctgatggagttcaggagaatcgctgcgtacctcttcaagggtaacaac
cgctggaaacagagtgtggagctctgcaagaaggaccgactctacaaggatgccatgcag
tacgcgtcagagtctaaggacacggagctggctgaggagctgctgggctggttcctgatg
gaggacaagaaggagtgctttgccgcctgccttttcacctgctacgacctgctgaggcca
gacgtggtgctggagactgcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtacctctccaaggtggacaagctggagacctcagagtcccta
cggaaagaggaggagcaggcgacagagacccaacccatagtctatggcacaccccagctg
atgctgactgctggccccagtgtgcccgtacccccacagcaggcctatggctatggttac
caggcccctgcgggctatccccaggcccctcaggcacagccaggcttcggctacagcatg
tga
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