Oncorhynchus gorbuscha (pink salmon): 123998758
Help
Entry
123998758 CDS
T07892
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123998758 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
123998758 (ddx42)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123998758 (ddx42)
Spliceosome [BR:
ogo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123998758 (ddx42)
Complex B
123998758 (ddx42)
Complex C
U2 SnRNP specific factors
123998758 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Adaptin_binding
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
123998758
NCBI-ProteinID:
XP_046159839
LinkDB
All DBs
Position
LG16:complement(12923059..12971738)
Genome browser
AA seq
930 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGGKKEELHVPQKSHTSFGGAGTAGGYGKNQQL
PAFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFQSGGGSDSEDDPLD
AFMAQVEDQAAKDMKKLEEKEKEKKAEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDE
DENIDYDSDGNPIAPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFELR
HKLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGI
AKTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLR
SVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMG
FEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVE
IMPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSE
RNKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKG
VAYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGG
GLGYRERPGLGAESSERSGGAAMGNYEGYSKTTGAMGDRMSAMKSAFQSQYKNHFVAASG
MVPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAALGMGTKMAGFTS
AGSLSSVSDSQATAPQGNAAPPSPREGPRDRHGDDRSRHGDGHYRDRRDRSERHSGGGER
DRYGERDRHADRDRYGDKDRHGSSGRHGDSRNGDGSRRDRERDDCRGDRESGDRAGSEGR
GDRAEGKGDREENSFAVPDPPKRKKSRWDN
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggtttggttttggaggattttcc
cttggtggtggtggtggtggaggaggaggaaagaaagaagaacttcacgtgcctcagaaa
tcccacacgtccttcggaggcgcagggacagcaggaggttatggcaagaaccagcaactc
cctgccttctacaagataggaacaaaaagagccaattttgatgaagagaatgcatatttt
gaagatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaactcc
cccacacggcaacaattccagtctggagggggctcagacagtgaggatgatcctctggat
gctttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaaaaa
gagaaggaaaagaaggctgaaaagggtatacgtgatgacattgaagaggaagatgaacaa
gaagcctacttccgctacatggcagagaatcccacagctgggctgactgcagaggacgag
gatgagaacatagactacgacagtgatgggaatcccattgcccccaccactaagaagatc
atcatgcccctgcccccgatggaccactctgagattgactacccaccttttgagaggaac
ttctacaacgagcatgaggagcttctcagcctgacaggcaccgaggtgtttgagctgaga
cacaaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagcttcgcc
cactttgggtttgacgagcagctgatgcacataatccgcaagtcagagtacactcagcca
acacctattcagtgccagggagttcccattgccctgagtgggcgtgacatgattggcatt
gcaaaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatg
gaccagaaggaactggagactggagaggggcccatcgcagtcatcgtgtgccccaccagg
gagctctgtcagcagatccatgcggagtgtaagcgttttgggaaagcctactccctgcgc
tcggtggcagtgtatggaggaggcagcatgtgggagcaggccaaggctcttcaggaggga
gcagagattgttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggccacc
tctctgcagagagtgacatatctggtgtttgatgaggcagatagaatgtttgatatgggc
tttgagtatcaagtgaggtccattgccagccatgtccgacctgatcgacagactcttctg
ttcagcgccaccttccgtaagaagattgagaggctggctagagatatcctggtggacccc
atccgcgtggtgcagggagacatcggggaggccaatgaggatgtgacccaggtagtggag
atcatgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagtttacc
tcctctggctctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggccacc
aacctgacccaggagggccacagcctgggcctgctgcacggagacatggaccagagtgag
aggaacaaggtcatcgctgacttcaagaagaagagtctgcccgtgctggtggccaccgac
gtggcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggct
cgggacatcgacacacacacacaccgaattggccgaactggtcgtgctggagaaaagggt
gttgcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaac
ctggagggagccaatcaaagtgtctctaaggagctgatggacttggcaatgcagaatccc
tggttcaggaaatcacgcttcaagggcggcaaagggaagaagctaaacattggaggaggt
ggtctgggctacagagagaggccaggattgggagctgaaagttctgagcgtagtggtggt
gctgctatgggtaactatgagggctacagcaagactaccggagccatgggagaccgcatg
tcagcaatgaagtcagccttccagtctcagtataagaaccactttgtggcggcgtccggc
atggttcctaaactcaccactaagtccagtagctcttcaggctggaccagcgctggaagt
ctgagctccgtccccaccggggcccctgagggcccagaccggccccgtgggcccccctcc
ttagccatggcccctccagcagccctcggcatgggcaccaagatggcaggcttcaccagc
gctggctccctgagctctgtgtcagacagccaggccactgctcctcaggggaatgccgcc
ccaccctcacccagggaagggccccgtgacagacatggtgatgacaggagtcgccatgga
gatggccactaccgtgacaggagagacaggagcgagcggcacagtggcgggggagagcgg
gaccgctatggggagcgggaccgccacgcagaccgcgacagatacggggacaaggatcgc
catggcagcagcgggcgccatggcgatagtcgtaatggagacggaagtagaagggacaga
gagcgagacgattgtagaggtgacagggagagtggagacagggcagggagtgaaggaagg
ggggacagagctgaggggaaaggagaccgagaggaaaacagctttgcagtcccagatcca
ccaaaacgcaaaaagagtaggtgggacaactaa
DBGET
integrated database retrieval system
