Oncorhynchus gorbuscha (pink salmon): 123998912
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Entry
123998912 CDS
T07892
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04270
Vascular smooth muscle contraction
ogo04625
C-type lectin receptor signaling pathway
ogo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
123998912
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
123998912
09153 Circulatory system
04270 Vascular smooth muscle contraction
123998912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123998912
Membrane trafficking [BR:
ogo04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
123998912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
123998912
NCBI-ProteinID:
XP_046160091
LinkDB
All DBs
Position
LG16:complement(47471420..47629046)
Genome browser
AA seq
1489 aa
AA seq
DB search
MSETQSTLTDRVPKKATRTLSILSKDHPPDKKPKSDKNTVPPLQEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKDDGSAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQVPLSEGEGGDPGVLSSSLSSPNSPGTMGGTGERCSTSTSPQDHI
ISPLPLWEENNAVHSQKVDILKKKLSKQQQDLQAMKEEYSRNPTAKLLKDIQEAKKHIPM
LRGQLRKATGTPQDGSLSPWDGEGGGIGAADREQTPSSQVESGSNGTWTNITVSPSPLPE
SPCHNPKTTPRDSLNSCPSPDAEDMPDLNCNFQCSVGSPLTCLNPQIIGAEDDYFDTEQE
QINGQCCCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKETRRIFM
DFYTFFMDRAANLKVAVPESIASELDRRRPELIPEELHRQYTQLLQDTLLPDIQGNLEDF
RQKRSMGLTLAEGELSKLDTERVRDHVALDRERSCAEHIISKIEDVLLTSQPTEEEKCTT
MQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKTEKEGEDKVKKPRFPSILGP
PRRPSRVDSTSIGKAIEMNKQRGPQKQLSQPILSIPDLPESLACGSQSRDPGSDVATDPS
AFIASPPHSAPTSQGSDPMRRDSDSGLTPSSALPRLSSDWLHSGDTQNRMAHPTSTHFDF
SPCTLDQLQEEERESDGVQEGSTPKPARRMQGLGCPDVPNEDDLGNEIECKQDSPNWQTL
VSREVLAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDSILPPGDIKHIF
TNLEEIVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIKRAVGTFCSNQP
FALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLESIAKYTE
DAAERDKVKRAGECCRKILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPMISEFKS
LDLTKRKMVHEGPLSWKVNKDKTIELYTLLLDDILVLLQKQDERLVLKCHSKNLAGTADT
KHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCLITQMAD
TMKTKPHNIIPLPQTDAERDAVEVISTGIPKLSKDPDRLSTGSIQFAEKYVTSSPGLQPT
PTSINPFDSIKSDDKEEESPLLLDRREEEEEEVEEVDEEEVEACLVGELADRLPLLQERS
CQGIAIDDQEPHDAFVMPPSRAEEALRTLAALRQVLLNHMTSREEGSDKNNENRKEKEQR
KGLAHGARLLRTTSMRGPEDSNSSTSGPRSAAASSPGSSENGTAGREEGAPGSSELPPGD
TGFFETSEDYGSYIVRGGSGESSTDDDGQASGKGGGRAQWGSDIDLKKLLSSSSQTGDAG
PNLSRQVMTHIRLLQANLQHLKKVETKYNELRQRLSETATDTEENKDES
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacacagtcaacactcactgacagggttcccaaaaaagcaaccaggaccctt
agcattctcagcaaggaccaccccccagacaaaaaacccaagagtgacaaaaacacagtc
ccacctctgcaggagtttgaccctactgggcttgtccagcgttgtgtgatcattcagaaa
gatgagaacggctttgggctgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagatgatggctctgccatgcgagcgggagtccagacgggtgataggatcatcaaggtt
aacgggagcttagtaacacattcaaaccatgtagaagtcgtaaagttaatcaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccgggactggcccaagtccccctgtca
gaaggtgagggtggagacccaggggtcctgtcgtcgtccctctcctcacccaactctccg
ggaacaatggggggaacaggggagcgctgctccacctccaccagtccccaggaccacatc
atctccccgctgcccctctgggaggagaataacgctgtacacagccagaaggtggacatc
ttaaagaagaagctgtccaagcagcagcaggacttacaggctatgaaggaggagtacagc
aggaaccccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctatg
ctacgtggccaactcagaaaggccacaggcacacctcaggatggctccctctccccctgg
gacggtgagggggggggcattggtgcggctgatcgagagcagaccccctcctcgcaggta
gagagtggcagcaatggaacctggaccaatatcactgtgtctcccagtcccctccctgag
agtccgtgccataacccaaagaccaccccccgagacagcctcaactcctgcccctcgcct
gacgccgaggacatgccggacttgaactgtaacttccagtgtagtgtgggcagccccttg
acctgtctcaacccccagatcatcggagcagaggacgactactttgacaccgagcaggaa
cagatcaatggtcagtgttgttgtttccagagtatagagctgcttaagtctcggcccgct
cacctggccgccttcctccatcatgtggtctctcagtttgaccctgcacctctgctgtgc
tacctttacgccgacctgtacaagcagaccaactccaaagagaccagacggatcttcatg
gatttctatactttctttatggaccgagcagcgaatctgaaagtagctgtgcctgagtct
attgcctctgaactagatcggcggagacctgagctgatcccagaggagctacacagacag
tacacacagctgctacaggacacactgctaccagacatccaggggaacctagaggacttc
aggcaaaagcgcagcatgggtctgaccttggcagagggggagctgtctaaactggacaca
gagagggtgagagaccacgtggcgctggatagagaacgctcctgtgccgaacacatcatc
tccaagatagaggacgtcttgctgacgtcacagcccacagaagaggagaagtgcactact
atgcagtatgttatcctcacatatatgaaacacctgggagttaaagtgaaggaacctcgt
agcctagagcccaaacgagtccgcatcaactttctacccaagatcaagaagagcatcaaa
actgagaaagagggggaggataaggtgaagaagcctcgttttcccagcatcctcggccct
cctcgtcggcccagccgtgtggactccacttcaatcggcaaggccatagagatgaacaaa
cagcggggccctcagaagcagctctcccagcccatcttaagcatcccagatctcccagaa
tccttggcctgcggcagccaatcaagggatccaggctcggatgtggcaaccgacccctcg
gccttcatcgcatcacccccacacagtgccccaaccagccagggctccgaccccatgaga
cgcgattctgactcgggtctcactccctcctccgccctgcccagactgagctctgactgg
ctccactcgggcgacacccagaacaggatggcccacccaaccagcacccactttgacttc
agcccctgcaccctggaccaattgcaggaggaggagcgtgagagtgacggagttcaagag
ggaagcacacccaaaccagcccggaggatgcagggtttaggctgtccagatgtgccgaat
gaggacgacctggggaatgagatcgagtgcaagcaggactctcccaactggcagacgcta
gtcagccgagaggtcctggcgggcctgacgccacaggagatcaagagacaggaagtcatc
aacgagctgttctacacagagcgagcccacctgaggatgttgaaggttctggataacgtg
ttctaccagaaactaacccgagacagcatcctgcctcctggagacattaaacacatcttt
actaacctagaggagattgtccagctacatgtgtcgataacagaacaggtgacagtcatt
cggaagaagaacgagacgtcagtgatagacctgataggagacgatctactagcttggttc
agtgatggcgaggaggagaagatcaagcgggcggtgggcaccttctgcagtaaccagccc
ttcgccctggaactcatcaagacccggcagaagaaggaccagcgcttcacctcctttatg
caggaggctgagagcaaccgtctgtgtcgcagactgcagctgaaggatatcattccagtg
gagatgcagaggctgaccaagtatccactgctgctggagagcatagccaagtacacagag
gatgcagcggagagggacaaggtgaagagggccggggagtgctgcaggaaaatcctcaac
tatgtcaaccagacagtgaaagaggcagagaacaaacagaggctagaggactaccaaaga
cgcctggacctgtcctcactcaaacagagtgagaacccaatgatctcagagttcaagagc
ctggacctgaccaagaggaagatggtgcatgagggacctctctcctggaaggtcaacaaa
gacaagacaatcgagctgtacacgctgctcctggacgacatcctggtgctgctgcagaag
caggacgagcggttggtcctcaagtgccacagcaagaacctggcgggcaccgccgacacc
aagcacatctttagccccatcatcaagctcaacactgtgctggtacgctcggtggccacc
gacaacaagtccttcttcgtgctgtctatgtcagacaacggagcccagatctacgagcta
atggcccagaccgtgtccgagcaaagaacgtggcagtgtctgataacgcagatggcagac
accatgaagacgaaaccgcacaacatcatacctttacctcagaccgatgctgagcgagac
gcagtggaggtgatcagcacagggatacccaaactgagcaaagacccagaccgcctttct
acgggaagtatccagttcgcagaaaaatatgtcacttcctcgcctggtctgcaacccacg
cccacatcgatcaacccatttgacagcatcaaatcagatgacaaggaagaagagtcgccg
ctactgctagacagaagagaagaggaggaggaggaagtggaggaggtagacgaggaggaa
gttgaagcgtgtctggttggagagctggcagacagactgcccttactccaggagaggtca
tgccaaggcattgccatcgatgaccaggagccccatgatgccttcgtcatgcccccctcc
agagccgaggaggccctaagaaccttggcagccctgaggcaggtccttctcaaccacatg
acaagcagagaggagggcagcgacaagaacaatgagaataggaaggagaaggagcagaga
aagggcttggcccatggcgcccgcctgctgaggacgacgtcaatgaggggcccagaggac
agcaacagcagtacatcgggccctaggagcgcagcagcatcctctcctggctcctcggag
aacggcacggcggggagggaggagggtgccccaggatcctcagaactcccgcctggggac
acaggcttcttcgagacatctgaggactatggcagttacattgtccgggggggctcgggg
gagagcagcacagacgatgacggtcaggcgagtggcaagggtggaggcagggcccagtgg
ggctcggacatcgacctgaagaagctgctctcctcatcctcgcagacaggggatgctggc
cccaacctcagccgtcaggtcatgacccacatccgcctgctgcaggccaacctgcagcac
ttgaagaaagtggaaaccaagtataatgaactgcgccaaaggctgagtgaaaccgctact
gacacagaggagaacaaagatgagagttag
DBGET
integrated database retrieval system
