Oncorhynchus gorbuscha (pink salmon): 123998936
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Entry
123998936 CDS
T07892
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35-like
KO
K12012
tripartite motif-containing protein 35
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
123998936
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123998936
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
U-box
zf-B_box
zf-RING_5
zf-RING_2
zf-Nse
zf-RING_6
zf-ANAPC11
RING_XB3-XBAT31
zf-RING_10
PAP_NTPase
DUF7671
DUF6794
Motif
Other DBs
NCBI-GeneID:
123998936
NCBI-ProteinID:
XP_046160147
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Position
LG16:complement(10715602..10721903)
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AA seq
520 aa
AA seq
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MALRPRASSQPGKPSFLQSPKVVMALRPRAVSSHSGSMLEDELTCSVCCEIFRDPVVLKC
THSFCRACLQQFWNQKKARRECPVCRRKCSLTEPTVSLALKNVADTFFREQRSQGEAGGG
PDRGGVPVKSEAKCHTHGEVLKLFCQDDAEVLCCVCHTSKRHQGHCVIPLEEGAQELKEE
MKKELIPLKKSLRGLYEAKQECDDTTVHIKSQTQQTENHIREAFEQLRQFLQNEEEARIA
ILQEEDEQKRHLVRKKTEGITADILTLSRAIIAIDNDIASSDALFLQNYRNTKKRAVIPQ
KGPEEISGAMINVAKHVSSLKYKVWEKMVGLVEYTPVTLDPNTAYSWLSLNKDLTSVTNS
GHVQVLPDNPERFDHFVFVLGSEGFTTGCHAWEVEVGDKDDWMLGVVKESINRKGRISGC
PEGGLWMISHCEGEYMAVTRPRTPLKLTGELKRVRVQLDYESGEVNFSNPVNMTSIYTFN
DFFTERMFPFFCPGANINGNNPGPLKICPVKVAVWNSATW
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcgcccacgtgcttcctcccagcctgggaaaccttcgttcctacagagcccc
aaggtggtcatggctctgcggcccagggccgtgtcctctcactcgggctccatgctggag
gatgagctaacctgctctgtgtgctgcgagatcttcagggaccctgtggtgctcaagtgc
acccacagcttctgccgggcctgcctgcagcagttctggaaccagaagaaggcgaggcgc
gagtgtcccgtgtgccgcaggaagtgttccctgacggagcccacagtgagcctggctctg
aagaacgtggccgatacctttttcagggagcagaggagccagggcgaggcgggcgggggg
ccagacagagggggcgtcccagtgaagtctgaggcaaagtgccacacacacggggaggtg
ctgaagctgttctgccaggatgatgccgaggtgctctgctgtgtgtgtcacacgtctaag
aggcaccagggccactgtgtgatcccactggaggagggggcccaggagctcaaggaagaa
atgaagaaagaattgatccctctgaagaagagcctccgtggcctctatgaagccaagcag
gagtgtgatgacacaactgtgcacatcaagagccagacccagcagacagagaatcacatc
agagaggcgtttgagcagctcaggcagttccttcagaatgaggaggaagccaggatagct
attctacaggaggaagatgagcagaagagacatctggtgaggaagaagacagagggcatc
acggcagacatcctcaccctctctcgtgccatcatcgctattgataatgacatagcctcc
agtgatgctcttttcctccagaactacagaaacacaaagaagagagctgtgatacctcag
aagggtccagaggagatctccggtgctatgatcaacgtggcgaagcatgtcagctccctc
aagtacaaggtctgggagaagatggtggggctggtggagtacactcctgtgactctggat
cctaacacggcctactcctggctctctctgaacaaggacctgaccagtgtgaccaacagt
ggtcatgtgcaggtgctcccagacaacccagagcgttttgaccacttcgtgttcgtcctg
ggctctgagggcttcaccaccggctgccacgcctgggaggtagaggtgggggacaaggac
gactggatgctgggtgtggtcaaggagtccattaacaggaagggccggatctcaggctgc
cctgagggtggcttgtggatgatctcccactgtgagggtgagtatatggccgtgacccgg
ccacgcacccctctcaaactgacaggggagctgaagagggtcagggtgcagctggactac
gagtctggggaggtgaacttctccaaccctgttaatatgacgtctatctacaccttcaat
gatttcttcactgagaggatgttccccttcttctgccctggagccaacatcaacggcaac
aaccccggcccactgaagatctgcccggtcaaagtggctgtgtggaacagcgccacctgg
tga
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