Oncorhynchus gorbuscha (pink salmon): 123998978
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Entry
123998978 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: UV excision repair protein RAD23 homolog A-like
KO
K10839
UV excision repair protein RAD23
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03420
Nucleotide excision repair
ogo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123998978
09124 Replication and repair
03420 Nucleotide excision repair
123998978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ogo03051
]
123998978
03400 DNA repair and recombination proteins [BR:
ogo03400
]
123998978
Proteasome [BR:
ogo03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
123998978
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
123998978
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Rad60-SLD_2
Crinkler
UBA_3
Dsc3_N
OTU1_UBXL
Ubiquitin_2
SWI-SNF_Ssr4_C
Motif
Other DBs
NCBI-GeneID:
123998978
NCBI-ProteinID:
XP_046160240
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All DBs
Position
LG16:complement(18854688..18863291)
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AA seq
355 aa
AA seq
DB search
MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK
DYKIDEKNFVVVMVSKAKSSTAASTPSSEAPKAPVQDSGSSSSAGPAPAAIPIPPEEPTP
TVAEPPAPASSDLSVEVQGGDASSALVTGAEYETMLTEIMSMGYERESVVAALRASFNNP
HRAVEYLLTGIPSSPVQETNPPAQLPASARTGTETPTVAEGENPLEFLRSQPQFQSMRQV
IQQNPSLLPALLQQLGRENPQLLQQISQYQELFIQMLNEPAGEVGDVPEVGDLGAAVEEG
APVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQGFEDE
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacgttaaaaacactgcaacagcagaccattcaaattgacatagacccagat
caaacggtgaaggcattgaaggagaagatagaagcagagaggggaaaagataacttccca
gtgtctggacagaagctcatatatgctggcaaaatcctgcaagatgatacacctattaaa
gactacaaaattgacgagaagaattttgttgtagttatggtatctaaggcaaagtcttcc
acagctgcttcaacaccttcctcagaggcacccaaggctcctgtccaggactctgggtcc
tcgtcgtctgcgggcccggcccctgcagccatccctatccccccagaggagcccacacct
acagtcgcagagcccccagctccagccagctcagacctcagtgtggaggttcagggggga
gatgcctcctctgccttggtgacaggagcggagtatgagaccatgctgacagagatcatg
tctatgggttatgagagggagagcgtggtagctgctctccgggccagcttcaacaacccc
catcgggccgtggagtacctcctcactggcattcctagcagtccggtccaagagactaat
cccccagcacagcttcctgcatctgcccgcacaggcacagagacccctactgtagctgag
ggagaaaaccctctggagttcctgcgttcccagcctcagttccagagcatgaggcaggtg
atccagcagaacccctcactgctgccagctctgctccaacagctgggccgggagaaccca
cagctcctacagcaaatcagccagtaccaggagctgttcatccagatgctgaatgagccg
gcgggggaggtaggagacgtgcctgaggtgggggacctgggtgctgcagtggaggaggga
gctccagtcaactacattcaggtcacacctcaggagaaagaagccatcgagaggttaaaa
gcgttgggtttccccgaggcgctggtgatccaggcctactttgcttgtgaaaagaacgag
aacctagcggccaacttcctcctgaaccagggctttgaggatgaatga
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