Oncorhynchus gorbuscha (pink salmon): 123999090
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Entry
123999090 CDS
T07892
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10 isoform X1
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ogo03009
]
123999090 (ddx10)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123999090 (ddx10)
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
90S particles
Helicases
123999090 (ddx10)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SecA_DEAD
PAS_11
Motif
Other DBs
NCBI-GeneID:
123999090
NCBI-ProteinID:
XP_046160434
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Position
LG16:57063430..57153586
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AA seq
857 aa
AA seq
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MEKGKRPNVSPNKKIRKKNPTDTIDPVKNFERWKKKYNKTKTRVKQEKRQKRRPEWQVEK
EAIQRLVNKYNEINAKDAERFSDFPISKNTLRGLMEAQYRQPTEIQRQTIGFALQGKDVL
GAAKTGSGKTLAFIIPVLECLYHQQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEF
SAGLIIGGKDLKNESEKIHRTNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDM
GFADTINAIVENLPKTRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQ
NYVVCELHQKVNMLFSFIRSHLQKKIIVFFACCKEVQYLFRVFCRLRPGMPILALHGKQQ
QMKRVEVYNDFIKKKNAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYK
EGGEALLVLLPSEEKGMLSQLQEKKVPINRIQVNPEKLTSVQQKLEAFLAQEKEQKERAQ
RCFVSYLRSVYLMKNKDVFDVFQLKLQEYAASLGLAVAPRVRFLNKVQKQRADPGQSGEP
GDVAPHEEEKELKSFKAQLRGDGLKSEAQESQSSDEEDEEEGDEKKLQPGPKGLIFGADE
TEEDEDMRDLDLLTVKRKDVFSLEEVDQDDEETDSNTIKKTEKETKFKEAKKVLKRNFQV
NTKLVFTEDGQMVQQWPPLQRTAVPATEGEEDDCTSGINVEEARERLRREDQEFDKLEYR
RKVKEKHREKRLKENAARREASKQYAEEQKSSEEDEEEVVAYLGGSDGEEFDPSTLPDPD
KLHYDSEEEDDQISPAAGMRKRIHSDHIDDSGEEEEEEAAAGSRKRPRQQATAKPLDTGL
SLAEDEALVLHLLGNRS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggcaaacgaccaaacgtgtcccccaataaaaaaataagaaagaaaaaccca
accgacactattgatccggtgaagaacttcgagcgatggaagaagaaatacaacaagacg
aaaacacgagttaaacaagagaaaagacagaaaaggagacctgaatggcaggtggagaaa
gaagctattcaaaggcttgtcaacaaatataacgagataaatgccaaggatgctgagagg
ttttcagatttccccatctcaaagaataccctgcgaggtctgatggaagcacagtatcgt
cagcccacagaaatacagagacagaccattggctttgcgttgcaaggtaaagatgttctg
ggtgctgcaaagacgggctctggaaaaacactggcctttatcattcctgtattggagtgt
ttgtatcatcagcagtggacagccatggatggcctgggggccctcatcatctccccgaca
cgagagctggcctatcagaccttcgaagtactccgtaaagtgggcaagaaccacgagttc
tctgccggcctcatcattggcggaaaggacctgaaaaatgagtctgagaagatccaccgc
accaacatcatcatctgcacgccaggacgcctgctccagcacatggatgagactgctgcg
ttccacgcctccgatctgcacatgctagttttggatgaggcggatcgtatcctggacatg
ggttttgccgacactatcaacgccatagtggagaacctccccaagacccgtcagacactg
ctgttctcagccacacagaccaagtcagtgaaagacctggcccgcctcagcctcaaagac
ccagagtacgtctgggtgcacgagaaggccaagttcagcacgccggctacgctggagcag
aactatgtggtgtgtgagctgcaccagaaagtcaacatgctcttctccttcatcaggagc
cacctgcagaagaaaatcatcgtcttctttgcctgttgcaaagaggtgcaatacttgttc
cgggtgttctgtcggctgcgtcctggcatgcccatcctggccctgcatgggaagcaacag
cagatgaagagggtggaggtctacaatgacttcatcaagaagaagaatgctgtgctcttc
gccacagacattgcagccagaggcctagacttccctgccgtgaactgggtgttgcagttt
gactgtccagaggatgccaacacatacatccacagagtgggacgaaccgccaggtataag
gagggaggagaggccctgcttgttctgctgccctcagaagagaagggcatgctatctcag
ctccaggagaagaaagtccccatcaacagaattcaggtgaacccagagaagctgacgagc
gtgcagcagaagctggaggctttcctggcccaggagaaggaacagaaggagcgagcacag
aggtgtttcgtctcctacctgcgctccgtctacctcatgaaaaacaaagacgtctttgat
gtgttccagctcaagctccaggagtatgcagcttctctgggcctcgctgttgccccaagg
gtgcgttttctcaacaaagtccagaagcagagagcagaccctggacagagcggcgagccg
ggagatgtggccccgcatgaggaggagaaggaactaaagagcttcaaggctcagctcaga
ggagacgggctcaagtccgaagctcaagaatcccaaagctcagatgaggaagatgaggag
gagggggacgagaaaaagttacagcccggtcctaagggtctcatcttcggggcagatgaa
accgaggaggatgaagatatgagggacctggacctgctcacagtgaagagaaaagatgtc
ttcagtctggaggaagttgaccaggatgatgaggaaactgacagtaacaccattaagaaa
acagaaaaagagaccaagttcaaagaggccaagaaagtcctgaagagaaacttccaagtc
aacaccaaattagttttcactgaagacggacagatggtgcagcagtggcccccgctccag
aggacggccgtgccagccacagagggggaggaggatgactgcacgtcgggcatcaatgtg
gaggaggccagagagaggctgcgccgagaggaccaggagtttgacaagctggagtacagg
cgtaaagtcaaagagaaacacagggagaagagactgaaggagaacgctgccagaagagaa
gccagcaagcagtacgctgaggagcagaagtccagtgaggaggatgaagaggaggtggta
gcgtacctgggcggttctgatggagaagagtttgaccccagcacactgcccgacccggac
aagctacactacgactcagaggaagaagatgaccagatcagccctgctgctgggatgagg
aagcgcatccacagtgaccacatcgatgactctggtgaagaagaagaggaggaggcggca
gcggggagcaggaagagacccaggcaacaagcaaccgccaagcccctggacactggcctc
tctctggccgaggacgaagcactggtcctgcatctgctggggaaccggagctag
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