Oncorhynchus gorbuscha (pink salmon): 123999234
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Entry
123999234 CDS
T07892
Name
(RefSeq) protein SMG8-like
KO
K18734
protein SMG8
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123999234
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
123999234
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Paralog
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Motif
Pfam:
Smg8_Smg9
DGR1
DUF2794
Motif
Other DBs
NCBI-GeneID:
123999234
NCBI-ProteinID:
XP_046160740
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All DBs
Position
LG16:57560300..57564316
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AA seq
931 aa
AA seq
DB search
MALPVSVGALLESEVIEDPLYKDEGLCVLGIFGKTAMLPGSPKEFLINTLADKHIYPLFG
LDETDNHNSGSLIHAYYSQENRVLYLVLTSVCDNRQLLWACESLSTGVGHSEAHEFWKGA
DKQHCLALLYLFSLCHVLLLVHPTCCFDVTYDRLFRALDALRQKVLPLLRAAIKDSTISK
EWKVNCRPCPPRLLFVFQMNGALRSYGGNGSDPSGGNADKPKKHSPRRRLQHALEDQIYR
IFRKSRVLTNQSSNCLFTVPANQAFVYVVPGPEEDPVAAVLGQLRSNCALRENDTSTSVS
GPRRYQQMRHSARQPSFNVESSSFSGGQLVDCNLKEFLWQHVELVLTKKGFDDSVGRNPQ
PSHFELPTYSKWAQVAYRLHQIMIANTEEETAELAVKVQSQLKFLEGFLDADAKFSENRC
QKALPLAHSAYQSNLPHNYTTTVHKNQLTQALRVYSQHARGVAFQRYALQLHEDCYKFWS
NGHQLCEERSLTDQHCVHKFHLLPQPDEKPEMDRNPPILNHNSRGRSTSSCNCGRKQAPR
EDPFDIQAANYDFYQMFEEKCCGKLERIDFPVFQPSTPDPAPACEEAPRPTEVAAPVPVP
LPEPGSGPSEGERLKESIPASHPVSHTPGESTSLSLALSLGHSTDSLGPYGDGGGGEGQE
KRHSLVDRQASTVEYLPGMLHSGCSKGLLPKFSSWSLVKLGPAKTYNPHTGLEQPGFLPG
SSFLLPWDVVIRSRSEEEVGLTEPLDGGPSSWPAPNKTVAGKRGSAGGLGRGRRRDDVAR
AFVGFEYEDSRGRRFLSSGPDKVVKVLGPGGAKEPATRALNTDMPLYIPSPAQGRGLKTH
YAQLARLYIVVPDAPLEITLNPQVQPGPPPCPVFHPERTELVLPSDGLWVLRFPYSYVTD
RGPCYPPKENQPLASYKVLRGILRANPLPPQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgcccgtgagtgtgggagcgcttctagaatcagaagtaatagaggatccatta
tacaaagatgaaggtctctgtgtacttggtatattcggtaagactgcaatgctacccgga
tcaccgaaagagtttctaatcaacacgctcgcggacaagcacatctatccactatttgga
ctggatgagacagacaatcacaacagtggaagcttgattcatgcgtactacagccaagaa
aaccgcgtattgtatctggtgcttacttcagtttgtgacaaccgacagcttttgtgggcg
tgtgagtctttgagtacgggcgtcggacactcggaggcgcacgaattctggaaaggagcg
gataaacagcattgcttagcattgctttacctattctcgttgtgccatgtcctgctactg
gtccatcctacatgctgttttgatgtcacctatgaccgattgttccgtgctctggatgca
cttcgccagaaagttctgccactactacgtgctgcaatcaaggattccaccatatccaaa
gaatggaaggtgaactgccggccctgtcctcctcgcctgctattcgtattccagatgaat
ggagccttgcgaagctatggtggaaatggttcagacccttctgggggaaatgctgataag
cccaagaaacactcgccaaggagacgcctccagcatgcattggaagaccagatatatcgc
attttccggaaaagtcgggtcctcaccaaccagagcagtaattgcttattcactgtccct
gctaaccaagcgtttgtttacgtggtgcctgggccagaggaggacccagtggcagccgtg
ctagggcagctgcgctccaactgtgccctgagggaaaatgacaccagcacctctgtgtct
ggacccaggcgctaccaacaaatgcgtcactctgcaagacaaccatccttcaatgtagaa
agcagcagcttctcaggggggcaactagtagactgtaatttgaaggagttcctttggcag
catgtcgaactggtgttgaccaagaaaggctttgatgacagcgttggtcgcaatccgcag
ccttctcattttgagctgccaacctactccaaatgggcacaagtggcctacaggctgcat
cagatcatgatagccaacacagaggaggaaactgcagagctggccgtcaaggtgcagagt
cagcttaagtttttggaaggtttcctggacgcagatgccaagttctctgagaaccgctgc
cagaaagccctgccactggcacatagtgcctaccagtctaaccttccccataactatacc
accactgtgcataaaaaccaactgacacaagcacttcgggtctacagccagcatgcacgc
ggtgtagcttttcagcgctatgccttgcagttgcatgaggactgctacaagttctggagt
aatgggcatcagctatgtgaagagcgcagtctgacagaccaacactgtgtgcacaagttt
cacctgctgcctcagccagatgagaagccagagatggaccgcaacccgcccatcctcaac
cacaacagcagggggcgttccactagctcgtgtaactgtggccggaagcaagcccctcgt
gaggacccctttgacatccaagctgccaactacgacttctaccaaatgtttgaggagaaa
tgctgcgggaagctggagaggatcgactttcctgttttccagccaagcaccccagatcca
gccccggcctgtgaagaagcacccagacccactgaggtggctgccccagtcccagtccca
ctgccagagcctgggtcagggccatcagagggggagaggctaaaggagagcatcccagcg
tcccacccagtgtcccacacccccggagagagcaccagcctcagcctggccctcagcctg
ggccattccactgacagcctagggccttatggagatggagggggcggtgagggccaggag
aagaggcacagcctggtggatcgccaggcctccactgtggagtaccttccaggcatgctc
cactcaggctgctccaaaggtctgctgcctaagttctccagctggtcgctggtcaagctt
ggccctgctaagacctacaacccccacactggcctggagcagccaggcttcctgcctggc
tcctccttcctcctgccctgggatgtggtgattcgctcccgctctgaagaggaggtgggc
ttaactgagcccttggatgggggaccctcttcctggccggcccccaacaaaaccgtggcg
gggaagcgagggagtgcagggggccttggtcggggacgcaggcgggatgacgtggcccgg
gcctttgtgggctttgagtacgaggacagtaggggccggcgtttcctcagctcaggacct
gataaagtggtgaaagtgctggggcctggaggggccaaagagccagccaccagggccctg
aacacagacatgcccctgtacattccctctccagcccaggggcgtggcctaaagacccac
tacgcccagctggcgcgcctctacattgtggtccctgacgcccccttggagataacactc
aacccacaggtccaacccggcccccctccatgtccagtgttccaccccgagcggacagag
ctggtgctgccctccgatggcctgtgggtcctacgtttcccctattcctatgtcacagac
cgtggcccatgctacccacctaaagagaaccagcccctggccagctacaaggtcctcaga
ggcatcctgcgtgccaaccctcttcctccacagtaa
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