Oncorhynchus gorbuscha (pink salmon): 123999240
Help
Entry
123999240 CDS
T07892
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03440
Homologous recombination
ogo03450
Non-homologous end-joining
ogo04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123999240 (rad50)
03450 Non-homologous end-joining
123999240 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
123999240 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogo03032
]
123999240 (rad50)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
123999240 (rad50)
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
123999240 (rad50)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
123999240 (rad50)
BRCA1-C complex
123999240 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
123999240 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
ABC_tran
AAA_29
AAA_22
AAA_13
LAM_C
Motif
Other DBs
NCBI-GeneID:
123999240
NCBI-ProteinID:
XP_046160745
LinkDB
All DBs
Position
LG16:39943463..39987280
Genome browser
AA seq
1333 aa
AA seq
DB search
MLPTVVSGCRLGAEPNKGAKMSRIEKMSILGVRSFGVEDKDKQVISFFNPLTVLVGPNGA
GKTTIIECLKYVTAGEFPPGSKGNTFVHDPKDAHETDVRAQIRLQFTDLNGDKVAVQRSM
LATQKGKKTEFRSLEGVITRIKHGEKVSLSSKCAELDREMISALGVSKAVLDHVIFCHQE
ESNWPLGEGKPLKNKFDAIFSATRYIKVLETLRQLRLKQSNEVRECQVELKFLKLNKEKA
LEIRELLASKETQLASSKDAVQKIAGQIEPLENRLVDIDENLGKVMKLDNDIKALDSRKK
QMEEDNQELEEKMEQVFQGSDEQLQEMYQNHQRTVKEKEKRFTECQREMERAVRECQRLN
RLQSDLLVEQGRLQLEADRHAQNMKARDSQVRALAAYLEMEGYDRSPFNDRQLQSFNRQV
KERLDQETEAANQVMRDIQEKEAMKQQSIDEIRDKKTGLERTMELKKDLQVKKQHELRNV
KSDLQRLEGSSSRLHELETELTKAERELESAVQSSNVDGLKAEVLELQKDKAELDRTQRR
LDREMETLNTHTTTRTQMDMLKKDKTDKEDQVRKIKSRHSEDLVSLLGHFPKKRELEDWI
HAKSKEINSTREKLAKLNKELASGEQNKSHITAEIRRKEQQLASYEEKMFNVCGSQDFQQ
DLGKLQDDLEKTSKQRAMLAGATAVYTQFISQLTEEGEPCCPVCQRIFPSEAELQDVIND
MQSKLRLVPDKLKNTEQDLKRKERRKDDMMALKPVRQSIAELQEKELPELRNRLQNVNRD
IERLKGDVEEQETLLSTLMSEEDTAKACLQDISLMDRYQLDLKDVERKIAQQAAKLQGVD
LSRTIQQVNQEKQETQHRLDTTSSKMELKRKLIQDQQEQIQSLKSSMNETRAEKLQISSN
MQKQQQLEEQCVEFTTEIQALHREIKEAKEQVSPLATTLEKLQQERLDLMERRKQRQEEG
QEKINSIKDKVKSMAAFEREITGYTKEGKDDYKEQKEGELRETNTQVHEAEKQRERINKD
SGNIRQDIDTQKVQERWLQDNLTLRKRIEELKDVTKKREAVAKDMGNMQVLQLRNERRES
EQRVDDLKKNRSVALGRQKGFEEEIIRFRKELREDQYGKADERFRDRMIVMRTTELANKD
LDIYYKALDQTIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSGAGVKR
RTYNYRVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDR
ENIESLAHALVEIIKSRSRQRNFQLLIITHDEDFVELLGRSNYVEHFYRIRKNMDQCSEI
TKCSVSSLTSYLH
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccacggttgtgtctggatgtcgtttgggtgctgaacccaataaaggtgcaaaa
atgtccagaattgagaagatgagcatcctcggtgtgaggagctttggagtggaagacaaa
gacaaacaagtcatatcattctttaatcccttgactgtgttagtgggacccaatggtgct
ggtaaaacgactatcattgagtgtctgaagtatgtaacagctggtgaatttcccccagga
agcaaagggaatacatttgttcatgatccaaaggatgctcatgagactgacgtgcgagct
cagatccgactgcagttcaccgatctaaatggagacaaggtggcagttcaaaggtccatg
ctggcaacacagaagggcaagaagactgagttcagaagtctggagggggtcatcaccagg
atcaagcatggagagaaggtgagcctgagctccaaatgtgcagagctggacagagagatg
atctcagccctgggtgtgtctaaagctgtcctcgaccatgtcatcttttgtcaccaagag
gagtccaactggcccctgggagaagggaagcccctcaagaacaaatttgatgccatcttc
tcagccacaaggtacatcaaggtgctggagacgctgaggcagctgaggctcaagcagtct
aacgaggtgagagagtgccaggtggagctgaagttcctgaagctgaacaaggagaaagcc
ctcgagatcagggagctgcttgccagcaaggagacccagctggcctcctccaaagatgcc
gtacagaagatagcgggccagatcgaacccctggagaaccgactggttgacattgatgag
aatctgggaaaagtgatgaaactcgacaatgacatcaaggctttagacagcaggaagaag
cagatggaggaagacaaccaggaactggaggagaaaatggagcaggtgttccagggctca
gatgagcagctgcaggagatgtaccaaaatcaccagaggacagtgaaggagaaggagaag
aggtttacagagtgccagagggagatggaacgagccgtgagagagtgccagagactcaac
cgcctccagtccgaccttctagttgaacaaggtcgtctccagctggaggctgatcgccat
gcccagaacatgaaggcccgcgactcccaggtgagagccctggcagcctatctggagatg
gagggctacgaccgttcccccttcaatgacagacagctgcagagcttcaaccgccaggtc
aaagaaagactcgaccaggagactgaggccgccaaccaggtcatgagggatatacaagag
aaggaggccatgaagcagcagagcatcgatgagatacgagacaaaaagactggtctggag
aggaccatggagctgaagaaagacctgcaggttaagaagcagcatgagctgaggaacgtc
aagtctgacctacagagactggagggctcctcctcccggctgcacgaactggagacagag
ctcaccaaagcggagcgtgagctggagagcgcggtgcagagctccaatgtggatgggctg
aaggccgaggtgctggagctccagaaggacaaagctgagctggaccgcacacagcgtcgg
ctggaccgtgaaatggagacccttaacacacacaccaccacacgcacacagatggacatg
ctcaagaaggataagacagataaagaagatcaggtgaggaagatcaagtcaaggcacagt
gaggatctggtgtccctgctgggtcacttccctaagaagagggagctggaggactggatc
cacgccaagtccaaagagatcaactccaccagggagaaactagccaagctcaataaggag
ctggcgtcaggggagcagaataagagccacatcacagcagagatcaggaggaaggagcag
cagctggccagctatgaggagaagatgttcaacgtgtgtggcagtcaggacttccagcag
gacctgggcaagctgcaggatgacctggagaagacttccaagcagagagccatgctggcg
ggagccacagccgtgtacactcagttcatcagtcagctgacagaggagggcgagccctgt
tgccccgtgtgccagcgcatcttcccctcggaggctgagctccaggacgtcatcaacgac
atgcagtccaagctgcgcctggtccctgacaagctgaagaacaccgagcaggatctgaag
aggaaagagaggaggaaggacgacatgatggctctaaaacctgtcaggcagtctattgct
gagctgcaggagaaggagcttcctgagctgaggaaccggctgcagaacgtgaaccgggac
attgagaggctgaagggggatgtggaggagcaggagaccctgctgtccactctgatgtca
gaggaggacacagccaaggcctgtctgcaggacatctccctcatggacagataccagctg
gacctgaaggatgtggagaggaagatagcccagcaagctgccaagctgcagggagtggac
ctgagccgcaccattcagcaggtcaaccaggagaaacaggagacccagcatcgcctggac
acaacgtccagcaagatggagctgaagcgtaaactgatccaggaccagcaggagcagatc
cagagcctgaagagcagcatgaacgagacccgggcggagaagctgcagatctccagtaac
atgcagaagcagcagcagctggaggagcagtgtgtggagttcaccactgagattcaggct
ctgcacagagagatcaaggaagctaaggagcaggtgtcccctctggccaccaccctggag
aagctgcagcaggagaggctggatttgatggagcgcaggaagcagaggcaggaggaggga
caagagaagataaatagcatcaaagacaaagttaaaagcatggccgcctttgaaagagag
attaccggatacacaaaagagggcaaggatgattacaaagagcaaaaagagggggagctc
cgagagaccaacactcaggtccatgaggcagagaagcaacgggaaaggattaacaaagac
agtggaaacatcaggcaagacatagacactcagaaggtccaagagcgttggctgcaggac
aacctgacgttgaggaaacgcatcgaggagctgaaggacgtgaccaagaaacgagaggct
gtggcgaaggatatggggaacatgcaggtcctgcagctacgcaatgagcgcagggagtct
gagcagcgagtggacgacctgaagaagaaccgcagcgtagcattgggccgacagaaaggc
ttcgaggaggagatcatccgcttccgcaaggagctccgtgaggaccagtacggcaaggct
gacgaacgctttcgggacaggatgatcgtcatgaggaccacagagctggccaacaaggac
ctggacatctactacaaggccctggaccaaaccataatgaagtttcacagtatgaagatg
gaggagatcaacaaaatcatccgggacctctggcgcagcacataccgaggacaagacatt
gagtatgtggagatccgctctgatgtggatgagaattcttccggggcgggagtgaagagg
aggacctataactaccgtgtggtgatggtgaagggagacacggcgctggacatgaggggt
cgctgcagtgccggccagaaggtcctggcctccctcatcatccgtctggctctggctgag
accttctgtctgaactgtggcatcctggccctggacgagcccacaaccaacctagacagg
gagaacatcgagtccctggcacacgcccttgtggaaatcatcaagagccgctcacgccag
cgcaacttccagctgctcatcatcacccatgacgaggactttgtggagctcctggggcgc
tccaactacgtggaacacttctaccgtatcaggaagaacatggaccagtgctctgagatc
accaagtgcagtgtctcctccctcacctcctacctgcactga
DBGET
integrated database retrieval system
