Oncorhynchus gorbuscha (pink salmon): 123999249
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Entry
123999249 CDS
T07892
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123999249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123999249
03041 Spliceosome [BR:
ogo03041
]
123999249
03009 Ribosome biogenesis [BR:
ogo03009
]
123999249
03016 Transfer RNA biogenesis [BR:
ogo03016
]
123999249
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123999249
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123999249
Spliceosome [BR:
ogo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123999249
Complex C
U4/U6.U5 tri-SnRNP related factors
123999249
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
Pre-60S particles
Helicases
123999249
Transfer RNA biogenesis [BR:
ogo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123999249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
123999249
NCBI-ProteinID:
XP_046160774
LinkDB
All DBs
Position
LG16:complement(84141299..84190623)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSTKKKPPIPEKGKATSNNDKGGTNEPPAAKTKREADNDGTD
EVVFGKKAKLETLSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDTKGRKG
GTRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNN
AVDCLSDDDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMG
KLEKMYNAIEIPNEESVVTYYRIRQQLAKLGKEIEEFVHKPKYCLPFLQPGRLVKVKNEE
VDFGWGVVVNFSKKSNVKASTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQVT
ALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFADG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaaccaccaatacctgaaaaggggaaagcaaccagtaataatgataaaggc
ggaacgaacgagccccctgctgccaagaccaagagggaagcagacaacgacgggacagat
gaggtggtgttcgggaaaaaggccaagctggagactctctctacagaggagatcaatctt
gcagactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagccctgagagggaagcagagggtaatcttcaccagccccatcaag
gccctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatg
accggtgatgtcaccatcaaccccactgcctcctgccttgtcatgacgactgagattctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagggatgcagagcgtggtgtggtctgggaggagaccatcatcctg
cttcctgacaatgtccactatgtcttcctgtccgccactatccccaacgcaaagcagttt
gctgagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagagaggacaacttcaacacggccatgcaggtgctgagagac
acaggggactctgggggcagcagcggtggtggcaagtgggacaccaagggacgcaaagga
ggaacacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttc
cagccggttatcatcttcagcttcagtaagaaggagtgcgaggcctatgccctgcaggtg
tccaagctggacttcaacacagatgaggagaagcagcttgtagaggaggtgtttaacaac
gctgtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgttctacca
ctactgaagagaggtatagggattcaccacgggggactgctccccatcctgaaggaaacc
attgagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgcc
atgggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgatggatcacgtctggcgagtacatccagatgtctggccgagctggcagg
agagggatggacgagagaggtattgtcatcttcatggttgatgagaagatgagccctgca
gtggggaaacagctgctcaagggctcagctgaccctctcaacagtgccttccacctcacc
tacaacatggttctcaacctgctgcgggtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggcgtcgtagagaagatggga
aagctggagaagatgtataacgccatagagatccccaacgaggagagtgtggtcacttac
tataggatccgccagcagctggctaaactgggcaaagaaatcgaagagtttgtccacaaa
cccaagtactgccttcctttcctccagcctggtagattggtcaaggtcaaaaacgaagaa
gttgactttggatggggcgtagtcgttaatttctcaaagaagtcaaacgtcaaggccagt
acaggtgatgcagaccctctgtacgtggtggaggtgctggtccactgtagtcaggagagt
gtgaagaatgcagctacagaggctgctaaacctgctgccactggggagaagggtgaaatg
caggtggttcctgtgatgctccgcctcttgacctctatcagttcagtccgtctctacatc
cccaaagacctccggccttatgacaacagacagagcatgctgaaatccatacaggaggtg
cagaagcgcttcccagacggagttcccctgctggaccccattgatgacatgggcatcaag
gacccaggcctgaagaagatcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggctgtctactccctctgcgagaagaaagcc
ctgattgcaggggacattaaaggggccaagcgggagctgaaaaaggctaggaccgtcctg
cagatggacgagctgaagtgcaggaagcgtgtcctgagacgtctggggttcgctacttcc
tctgatgtcatcgaggtgaagggcagagtggcctgtgagatcagcagtgctgatgagctg
ctgctgactgagatggtgttcaacggtctgttcaatgatctgactgcagaacaggttact
gctttgctcagtgtcttcgtcttccaggagaatgcgaatgagatgcccaagctgacagag
cagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgctaaggtgtct
gcagaggctaaactggaggtggatgaggagacctacctggacaagttcaggcctcacctg
atggatgtggtctacacctgggctaacggatccacctttgctcagatctgcaagatgacc
gacgtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagaactgctgcgtcag
atgtgtcaggcagccaaggccatcggcaacaccgagctggagaacaagtttgcagatggt
atcacaaaaatcaagagggatattgtgtttgctgctagtctatatctgtaa
DBGET
integrated database retrieval system
