KEGG   Oncorhynchus gorbuscha (pink salmon): 123999573
Entry
123999573         CDS       T07892                                 
Name
(RefSeq) roquin-2-like isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ogo03000]
    123999573
   04121 Ubiquitin system [BR:ogo04121]
    123999573
Transcription factors [BR:ogo03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    123999573
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    123999573
SSDB
Motif
Pfam: ROQ_II zf-CCCH zf-CCCH_4 zf_CCCH_4 Roquin_1_2-like_ROQ
Other DBs
NCBI-GeneID: 123999573
NCBI-ProteinID: XP_046161433
LinkDB
Position
LG16:85090559..85118601
AA seq 1033 aa
MVTKRDEDSSLMQLKEEFRAYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLIHKS
HMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANIDHSPDAAAAPCW
EELESVMLAVKVVVHGLVEFIHNFSRKSHETAQPQPNSKYKTSICRDLRQQGGCPRGSNC
TFAHTQDELEKNRMRNKKISGVGRPFLLAQGSMGSALSMEGGDSGEEACTGGLKSSDSGG
SGSLKEGATPSQLMPRGEDMMEEMKRERSVLNGSTGSSRSSSGSMEQKSISPPKTPDNSS
SAPSPYGPGSRLECDSAHPKQAQYLMIRPLPQPPPHQPQSSELCYQDPQPPYDVQPYQPA
SNYYPSAIHHHKPCVARFLRSSHVPESSLPPSMSPLYSEQYPSLPPPREHTGPSPYGPSS
VPQYGPLAPAHGGYAPLYDSRHMWRPQLYHREDARSNSLPPEVLHSSVYQPPLRERYASL
DSPYCSAGEHRAALHRNSYGRFPLGCEDLFRRKQEQWAHHHHGNVNRPSQSSPVFTVDFG
AEHDDGGGGQCMNCKFRGEENLSHYSPWSCGTISTCISPFEPEYHKASAHSRSENLEVDK
GERTRWLHTFEPYRRLKDEDPSIPFETYRRLKDEDPSIPFETYRRLKDEDPSIPFEPYRR
LKDEDPSIPFEPYRRLKDEDPSIPFETYRRLKDEDPSIPFETYRRLKDEDPSIPFEPYRR
LKDEDPSIPFDPYCRLKDEDPSIPFETYRHLKDEDPSIPFETYRRLKDEDPSIPFETYRR
LKDEDPSIPFEPYRRLKDEDPSIPFGEGPIIPFGEGPIISKWGVISRASRTGYHTTDPVQ
ATACQGSNSTIPINFRDYGPHIGHGDYRWSSGGSDSSSHSSFLEGEQLAALRRSFSSGEK
VGAGDMLQTDYCKDTTEHQLDRDVELELSVLDVEDPVLQDNRQQSEKPLELREPHLLTPP
SSEPMRTQTDKLSADKMEAQLLKKMAFRRSLSPVGLGSGGLSVGKLMMRTGPLRLGDMGP
CPNTGPEMLLNGN
NT seq 3102 nt   +upstreamnt  +downstreamnt
atggtgaccaagcgtgacgaggactcgtcgttgatgcagctaaaggaggagttccgtgcg
tacgaggcgctgcgtcgcgagcatgatgcccagatcgtacacatcgccatggaggcgggg
ctccgtatctcccctgaacagtggtcctctctgctctatggagacctcatccacaagtcc
cacatgcagtccatcatcgacaagctccagtccccagaatcctttgcaaagagtgtccag
gagctgacgatagttctacagagaacaggagacccagccaatctgaacagcctcagacca
cacctggaactactggccaacatcgaccacagcccagatgcagcggcggctccgtgttgg
gaggagctggagagtgtgatgctggcggtgaaggtggtcgttcatggtctggttgagttt
atacacaacttcagtaggaagagccatgagacagcacagccgcagcctaacagtaaatat
aagaccagtatctgtcgagacctccggcagcagggtggctgtccccgaggatccaactgc
accttcgcacacacacaggacgagctagagaagaacagaatgagaaacaagaagatcagt
ggcgtgggccggcccttcctcctggcccaggggagtatgggtagtgctctgagtatggag
gggggcgactcaggagaggaggcctgcactgggggcctgaagagctcagacagtgggggg
tcagggtccctaaaggagggggccacaccctcccagctcatgcccaggggagaggatatg
atggaggagatgaagagggagaggtctgtacttaacggatccacaggctccagccgatcc
tcatctggctctatggaacagaagtctatttctcctccaaagacaccagacaattcctcc
tcagctccttctccctatggcccagggtctagactagagtgtgactctgcacaccccaaa
caggcccagtacctaatgataagaccccttcctcagccccctccccaccaacctcagtcc
tctgaactgtgttaccaggacccccaacctccctacgacgtgcagccctaccagccagcc
agtaactactacccctctgcgatacaccaccacaaaccctgcgtggctcgcttcctccgt
tccagccatgtcccagagtcctctctgcctccctccatgtcccctctgtactcagagcag
tacccctccttgcccccaccacgggagcacactggtccctctccctacggtccctcatcg
gtcccccagtacgggcccctggccccagcccacggtggctacgctcccctgtatgacagc
cggcacatgtggaggccccagctgtaccaccgagaggacgccaggagtaactcgctgcct
cccgaggtgctgcactcctctgtgtaccagcccccccttcgagagagatacgcctccctg
gacagcccctactgctcagcgggggagcacagagcagcactgcacaggaactcttatggg
cgttttcctcttggatgcgaggatctgttcaggcggaaacaggagcagtgggcacaccat
caccacggcaacgtgaacaggccctcccagtcctcccccgtcttcaccgtagactttggt
gcagagcatgatgacggtggtggtggtcagtgtatgaactgtaagttccgtggagaggag
aatctgtcccactactctccctggtcctgtggaaccatcagtacctgcatcagccccttt
gaaccagagtatcacaaggcctcagctcactcccgctccgaaaacttagaagtagacaaa
ggtgaaaggacgcggtggctacacacgtttgagccctaccgccgtctgaaagacgaggac
cccagcataccgtttgagacctaccgccgtctgaaagacgaggaccccagcataccgttt
gaaacctaccgccgtctgaaagacgaggaccccagcataccgtttgagccctaccgccgt
ctgaaagacgaggaccccagcataccgtttgagccctaccgccgtctgaaagacgaggac
cccagcataccgtttgaaacctaccgccgtctgaaagacgaggaccccagcataccgttt
gaaacctaccgccgtctgaaagacgaggaccccagcataccgtttgagccctaccgccgt
ctgaaagacgaggaccccagcataccatttgatccctactgccgtctgaaagacgaggac
cccagcataccgtttgaaacctaccgccatctgaaagacgaggaccccagcataccgttt
gaaacctaccgccgtctgaaagacgaggaccccagcataccatttgaaacctaccgccgt
ctgaaagacgaggaccccagcataccgtttgagccctaccgccgtctcaaagacgaggac
cccagcataccgtttggagaggggcccatcataccgtttggagaagggcctatcatctcc
aaatggggggtgatatcccgcgcctcccgtacaggataccacaccaccgacccggtccag
gccacagcctgccagggaagcaacagcaccatccccatcaacttcagagattatggtcca
cacatcggccatggggactacaggtggagctccggggggtctgactcttccagccactcc
agtttcctagagggtgaacagctagccgcccttcggcggtccttcagcagtggagagaag
gttggtgcaggagacatgctgcagactgactactgtaaagacacgacagagcatcaactg
gacagagacgtagaactggagctgtctgtactagatgtagaggaccctgtcctgcaggac
aaccgtcaacagtctgagaagcccctggagctgagagagccccacctcctcacccctccc
agcagtgaacccatgaggacacagacagacaagctgtcagcagacaagatggaagctcaa
ctactgaagaagatggccttcaggaggtctctctcccctgtaggtctgggctcaggaggc
ctcagcgtggggaagctgatgatgaggaccggccctctgagactgggggacatgggccct
tgccctaacacaggccctgagatgctgctcaacgggaactga

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