Oncorhynchus gorbuscha (pink salmon): 123999615
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Entry
123999615 CDS
T07892
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123999615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
123999615
03009 Ribosome biogenesis [BR:
ogo03009
]
123999615
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123999615
Spliceosome [BR:
ogo03041
]
Complex A
U1 snRNP components
U1 related factors
123999615
Complex B
123999615
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
Pre-60S particles
Helicases
123999615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123999615
NCBI-ProteinID:
XP_046161502
LinkDB
All DBs
Position
LG16:complement(16721329..16726828)
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AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFY
QEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNM
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGG
HSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASG
FDKSGNGFGGGYGTNGQSNYGASQTGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttctgaccgagatcgtggtagagatagaggatatggcagtggaccacct
cgttttggaggcggtggaagaggtggtggtggtggggggaagtttggtaatcccggtgat
agactgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttac
caagagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtact
aaagcggttactgtgaaggggagggactgtcctaatccaattatgaagttccatgaagcc
agttttccaacctacgtgatggatgtcattaataaagcaggctggtcagaaccaacaccg
atccaagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacag
actggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccag
cctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctg
gctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtc
tgtgtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggag
atttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaacatg
cgtagatgcacttacctggtactggatgaggctgaccgaatgctcgacatgggtttcgaa
ccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacgctgatgtggagt
gccacttggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccag
atcaatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtt
tgcaatgatggcgagaaagaagacaaactcctccgccttctagaggagatcatgagtgag
aaggagaacaaaaccataatctttacagagaccaagaggagatgtgacgagatcactagg
aggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggag
agggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagac
gtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactacccc
aacaactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagactggc
acagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgctgtg
ctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggt
cattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcc
tccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggttttgac
agtggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagtggc
tttgacaaaagcggcaatggttttggcggcggctacggcaccaacggccagtcaaactat
ggtgccagccagaccggggtgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcaacaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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