Oncorhynchus gorbuscha (pink salmon): 123999732
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Entry
123999732 CDS
T07892
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123999732
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
123999732
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
cEGF
SGL
Motif
Other DBs
NCBI-GeneID:
123999732
NCBI-ProteinID:
XP_046161718
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All DBs
Position
LG16:complement(79693718..79730566)
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AA seq
842 aa
AA seq
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MLTSILEILILRICLQQCGFVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEN
TCVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDERVEVCHTRTCRVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEMSCGNITCASLEFTCASGRCISLNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGNWVCDDDVDCQDQSDESPQRCGRQPTPPAKCSSSETQ
CGSGECIHRKWRCDGDPDCKDGSDEANCSVRTCRPDQFKCEDGNCIHGSRQCNGLRDCAD
GTDEVNCKNLTQCNGPDKFKCRSGECIEMSKVCNKARDCPDWSDEPINECNLNECLLNNG
GCSHICRDMVIGFECDCTPGLQLIDRKTCGDINECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQRIFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNVTPVGIAVDWIYNNIYWSDLGTKTIEVANFNG
TKRKVLFSSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVQTDIQWPNG
ITLDLIKSRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGEN
EAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLSGTNWCNEKGLNGGCAYMCLPAPQ
INKYSPKYTCACPQDQTLASDALHCRPEANSSTSIHEANFTARGSTAAWAILPVLLLAMA
AAGGYLMWRNWQLKNKKSMNFDNPVYLKTTEEDLNIDISRHTSNIGHTYPAISVVNTEDD
LS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgtctattctggagattcttatcctacggatatgtcttcaacagtgcggtttt
gtacacggatcaaagaccgaatgtgagcccagtcagttccagtgtgggaacggtcgctgc
atcccgtctgtctggcagtgtgacggggatgaggactgctcggacgggagtgacgagaac
acctgcgttcggaagacctgtgcagaggtggactttgtctgtcgtaatggccaatgcgtc
cccaagagatggcactgcgacggagagccagactgtgaggatgggtctgacgagcgtgtg
gaagtgtgccacaccaggacctgccgtgtgaatgagtttagctgtggggccgggtccacc
caatgcatccccgtcttctggaagtgtgatggagagaaggactgcgataacggagaggat
gaaatgagctgtggtaacatcacgtgcgcctcgctggagttcacctgtgcaagcggccgc
tgcatctcccttaacttcgtctgtaacggggaggatgactgtggtgacgggagtgatgag
caggaatgtgctccgtcctcctgtggtcccagcgagtttcagtgtggcaatgccacctgt
atccctggcaactgggtctgtgacgatgacgtggactgccaggaccaatcggatgagtcc
cctcagcgatgtggtcgccaacccacgccgccggccaaatgttcatccagcgagacacag
tgtgggtctggggagtgcatccaccgcaagtggcgatgtgacggggacccagactgcaag
gatggcagcgatgaagccaactgttctgttcgtacctgcagaccggaccagttcaagtgt
gaggacggcaactgtatccacggcagcagacaatgcaatggtttgcgtgattgtgcagat
ggcaccgatgaagtcaactgcaaaaacttgacgcagtgcaatggccctgacaaattcaag
tgtcggagtggagagtgtatagagatgagtaaagtgtgcaacaaggcccgggactgtcca
gactggagcgacgagcccatcaatgagtgcaacctgaatgagtgtctgctgaacaatgga
ggctgctcccacatctgcagggacatggtgattggcttcgagtgtgactgcacccctgga
ctgcagctcatagaccgcaagacctgtggcgacatcaatgaatgtatgaaccctgggatc
tgtagtcagatttgtatcaacctgaagggaggttataagtgcgagtgccacaacagctac
cagatggaccccaccacaggagtgtgcaaggctgtgggcaaggaaccctgtcttatcttc
actaaccgccgggacatccggaagctgggtctggagcggagggagtacacccagattgtg
gagcagctgcggaacacagtggcactggatgcagacttcacccagcagaggatcttctgg
gcagacctgagccagagggccatctttagcacggtgttggataagagaggagatgtagga
agtcatgtgaaggtgattgataatgtgacacctgtggggatcgctgtggactggatctat
aacaacatctactggtcagacctcggcaccaagaccattgaagtggccaacttcaacggc
accaagcggaaggttctcttcagcagtggtttgaaagagcctgcgtccatcgctgtggat
ccactctctggattcctctattggtcagactggggtgaaccagcgaagattgagaagtct
ggtatgaacggggttgacaggcaggtcctggtccagactgatattcagtggcccaatgga
atcactctagacctgatcaagagcagactgtactgggtggactccaagctgcacatgctc
tgtagcgtggacctgaacggcgacaaccgtaggaaagtgctgcagtccccagactacctg
gctcacccctttgcgctcactgtgttcgaggatcgagtattctggacagatggggaaaac
gaggcaatctacggagcaaacaagttcacaggctctgatgtgattaccctggcaagcaat
ctgaacgagccgcaggacatcattgtttaccatgagctaatccagctgtccggaacaaac
tggtgcaatgagaagggtctgaacggaggctgtgcctacatgtgcctgccagcgccacag
atcaacaaatactcccccaagtacacatgtgcgtgtccccaagaccagacgctagcctca
gatgcccttcactgcagaccagaagccaacagcagtacatccatccatgaggcgaacttc
acagctagaggatctacagctgcctgggctatcctccctgtgttgttgctggccatggct
gcagcaggaggctacttgatgtggcgtaactggcagctgaagaataagaagagcatgaac
ttcgacaatccagtgtacctgaaaaccacagaagaggacctcaacatagatatcagcagg
cacacttccaatataggccacacatacccagcaatatcagtggtgaatacagaagatgac
ttgtcataa
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