Oncorhynchus gorbuscha (pink salmon): 124000601
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Entry
124000601 CDS
T07892
Symbol
dhx29
Name
(RefSeq) ATP-dependent RNA helicase DHX29
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
ogo03012
]
124000601 (dhx29)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124000601 (dhx29)
Translation factors [BR:
ogo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124000601 (dhx29)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_DHX29
DEAD
Helicase_C
OB_NTP_bind
HA2_C
DSRM_DHX29
AAA_22
nSTAND3
HA2_N
AAA_19
NPHP3_N
AAA_16
nSTAND1
ATPase
Motif
Other DBs
NCBI-GeneID:
124000601
NCBI-ProteinID:
XP_046163056
LinkDB
All DBs
Position
LG16:84190672..84219370
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AA seq
1382 aa
AA seq
DB search
MGGKKKKSAAVPTVQPAAAGNNVPAAGNGVADPATTGKKQKPTPAKAAVKDIKPKGPKTY
SLTNTAQVDTGGVTDKSILKVVIQTDLEKKIIKLINDFRQENGDKGPISGRLTNKKLLDL
YLALQKFKFKTEHIEEAMKSSVLYGGDLHSALDWLCLNLKDEELPAGFSQRMQEENHETK
PKFQPAPQAPEPESPKEPKKEPAKVPVKDEGASVKEWILRYAEQSSEESSEEEEEQSGKK
TRNPELDEKFDPNDRYLVLTAQLYDAKEMAATAKAKKDKGGQRTAQDRIRVIQQEMKPLE
SHPMFNTMIKVVDTPKIEEKKPPAPTEGKEELAFGLFEQAEKETPPPAEKTAKNNEPKDI
RNFDYTARSWTGKSPKQFLIDWVRKNLPKSPAPSFQKVAAGRYWKCRVRVQRLDDVLEVC
PNILTEDGMQAQHLGATLAIYNLCKGQSVHMLIPPTYREVWLEWRDSEQAEEEELRTAIN
KPRDQFITRLLTRLKQQQPQKKCPSPQPGLQGAGDELEDDWESLANMEEEEDPGKTITPK
ERGGGVAEVAARALLLKLRGSALSRRLQTDREQLPVFQHRVRVMEALRRNRVVVVAGETG
SGKSTQIPQFILEELLTGGAAAQPCNIVVTQPRRISAMSLASRVSQELGCDDGPGSKSSL
CGYQIRMENKSSDSTRLLYCTTGVLLRKLQQDHMLSSLTHIIVDEVHERSVQSDFLLTIL
KDMVQKRSNLHLVMMSATVDCDKFAAYFNRCPIVNIPGRTFPVEVFHLEDIVEETGYVLE
KDSEYSQKILEEEEEVNINFTQKGGKSMQHQEFIVKDSGSGWDLGPDLDHFSSRTRHALQ
YMNPNKINMELVLDLLDYLDKSPQFAVVDGAVLVFLPGLAHIQQLYDLLSTDKRFRGKDR
YKLVALHSTLSSKDQAAAFTVPPTGVRKIVLSTNIAETGVTIPDVVFVIDTGKTKENKYH
ESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRLYPKFRFQAFMDYSIPEILRVPLEE
LCLHIMKCEYGSPEEFLCRALDAPQPQSVSNAVCLLRRIGACIPEGHALTPLGHHLATLP
VNVKIGKMLIFGAILGCLDPIATIAAAISEKSPFATPMNQKDQANLAKAALAVANSDHLT
IYNAYLGWKNIRSEGYRAEMAYCRKHFLNRTALITIEDIKQELMRMMDQAGFSGSSRSGR
GPPSRDRSDPRGPQAPLTPLGKPQICVLNAVLTAGLYDSVGRILYTPSVDVLDRVACSVE
TAQGKAQVHPSSVNRCLQTRGWLLFQEKVKYSKIYLRDTTLISPFPMLLFGGDIDVQHRE
RLISLDGWIHFQAPVRIGVIFKHLRKLIDSLLEKKLENPRMNLEDEKTIQLIIELIKMEN
VF
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaaagaagaagaaatcagccgctgtccctacagtccaaccggcagcagcaggc
aacaatgttcctgctgctggaaacggcgtggctgaccctgctactactgggaaaaagcag
aagccaactcctgctaaagctgctgtgaaagatatcaagccaaaaggtccaaagacctac
agcctcacaaacacagcacaagtggacacaggaggagtcactgacaagtctatactcaaa
gttgtcattcaaacagacttggagaagaagatcatcaaactgatcaatgatttcaggcaa
gagaatggagacaaaggaccgatatcaggaagactcaccaacaagaaactgctggatctc
tacttagctctgcagaagttcaagtttaagacggagcacattgaggaagccatgaaaagc
agtgtgttgtatggaggagacctgcactctgccctcgactggctttgcctgaacctaaaa
gatgaggaactgccagcaggtttcagtcagaggatgcaggaagagaaccatgagaccaag
ccaaagttccagcctgcaccccaagcacccgaacctgagtctcccaaagagccgaagaaa
gagcctgcaaaggtgcctgtgaaggatgagggagccagtgtgaaggagtggatccttaga
tacgcagagcagtccagtgaggagagcagcgaagaagaggaggagcagagtgggaagaaa
acacggaacccagaactggatgagaagtttgatccgaacgacaggtacctggtgctcact
gcacaactgtacgatgccaaggagatggctgctacagccaaggccaagaaggacaaagga
ggacagaggactgcacaggacagaatcagagtcatacagcaagagatgaagccactagaa
tcccatcctatgttcaacacaatgataaaagttgtagacacgcccaaaatcgaggagaag
aaaccacctgctccaactgagggcaaggaagaactggcattcggcctgtttgaacaagct
gaaaaggaaacgccccctcccgcagagaaaacagcgaaaaataatgagcctaaagacatc
cgtaactttgactacacggctcgcagctggaccggcaagtcccccaaacagttcctgatt
gactgggtcaggaagaacctccctaagagccctgctccctccttccagaaggttgctgct
gggagatactggaagtgcagggttcgtgttcagagactggatgatgttttggaggtttgt
cccaatattctcactgaggacggcatgcaggctcagcacctgggtgcaacactggccatc
tacaacctatgtaaaggacagtcagtccatatgttgatccctcccacgtaccgtgaggtg
tggctggagtggcgggacagcgagcaggcagaggaggaggagctccgcacagccatcaac
aaaccccgagaccagttcatcacccgactgctgacccggctgaagcagcagcaaccccag
aagaagtgtccttctccccagccagggctgcagggagctggggacgagctcgaggatgac
tgggagagcctggccaacatggaggaagaggaggacccggggaaaaccattaccccgaag
gagagaggtggtggggttgcagaggtggcggctcgggcccttcttctgaagctccgtggc
tcggccctgtccaggcggttacagacggacagagagcagctcccggtgttccagcaccgc
gtgcgggttatggaggctctgcgacgcaaccgtgtggtggtggtagcgggggagacgggc
agcgggaagagtacccagatcccccagtttatcctagaggagcttctgactgggggagct
gctgcacagccctgtaacatagtggtcacccagccacgcaggatctctgccatgagtctg
gccagcagggtgtctcaggagctgggctgtgacgatgggcctggatccaagtcgtcgctg
tgcgggtaccagatccggatggagaacaagtcttcggactcgacccgtcttctgtactgc
accaccggggttctcctcaggaagctgcagcaggaccacatgctcagctctctgacccac
atcatagtggacgaggtccatgaacgcagcgtccagtctgatttcctgctgaccatcctg
aaggacatggtccagaaacggtccaacctgcacctggtcatgatgagcgccacggtcgac
tgtgataagttcgctgcctacttcaaccgctgtcctatagtcaacatccctggcagaacc
ttccctgtcgaggtgttccatctggaggacatagtggaggagacaggctatgttctggag
aaggactctgaatacagccagaagatcctggaggaggaggaggaggtcaacatcaacttc
acgcagaaaggaggaaagagcatgcagcaccaggagtttatagtgaaagactcaggctct
ggctgggacctgggtcctgacctggaccacttcagcagccggacccgccacgccctgcag
tacatgaaccccaacaaaatcaacatggaactggtcctggacttgctcgactacctggat
aagtctcctcagtttgcagtggtggatggagctgttctggtgttcctcccaggtctggcc
cacatccaacagctttatgacctgctctccacagacaagaggttccgtggcaaagacagg
tacaaactggtagccctgcactccacactgtcatctaaggaccaggctgctgcatttaca
gtgccccctactggagttagaaagattgtgctgtccacaaacatagcggaaactggagta
acaatacctgatgttgtgttcgttattgataccggaaagaccaaagaaaacaagtaccat
gagagtagccagatgagttccctggtggagacgtttgtcagcaaggccagcgccctccag
aggcaaggcagggcaggacgcgtgcgggatggcttctgcttccgcctgtaccccaaattc
aggtttcaggctttcatggattactccataccagagatactgagggttccactggaggag
ctgtgtcttcatatcatgaaatgtgagtatggctctccagaggagttcctgtgtcgagcc
ctagacgcaccccagccccagtctgtgagtaacgccgtgtgcctgctccggaggatcgga
gcgtgtataccggagggccacgccctcaccccgctgggtcaccatctcgccaccttgcct
gtcaacgtcaagatcggcaagatgctcatctttggtgccatcttgggctgcctggacccc
attgcgactatagcagcagcgatctcggagaagtctccctttgccacacccatgaaccag
aaggatcaggctaacctggctaaagctgccctggctgtagccaactcagatcacctgact
atctacaatgcttacctggggtggaagaacatacgcagtgagggatatcgagccgaaatg
gcctactgcaggaaacacttcctgaaccgtaccgccctcatcaccatagaggacatcaaa
caggagctgatgcgtatgatggaccaggctggattctctggttcctccaggtccggtcga
gggccaccttcccgggatcggtctgaccccaggggtccccaggctcccctcacccccctt
ggtaagcctcagatctgtgtcctgaacgcggtgctgacggcaggattgtatgacagcgtg
ggacggatcctctacactccctctgtggacgtcctggaccgggtggcgtgctctgtggag
actgcccaggggaaggcccaagtccacccctcctctgtcaaccgctgcctgcagacacgc
ggctggctgctcttccaggagaaggtaaaatactctaagatctacctgcgggacacgacg
ctgatctctcccttccccatgctactgtttggaggggacatcgacgtacaacaccgggag
agactcatctctctggatggatggatacacttccaggccccagtgaggatcggagtgatc
tttaaacatctgaggaagctcatagactcactactggagaagaagctggagaacccaagg
atgaatctagaagatgagaagactatccagttgataatagaactgatcaagatggagaat
gtcttctga
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integrated database retrieval system
