Oncorhynchus gorbuscha (pink salmon): 124000660
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Entry
124000660 CDS
T07892
Name
(RefSeq) transcription factor SOX-30-like
KO
K09271
transcription factor SOX15/30
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124000660
Transcription factors [BR:
ogo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124000660
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
124000660
NCBI-ProteinID:
XP_046163164
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Position
LG16:complement(38712466..38726906)
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AA seq
637 aa
AA seq
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MFATMDRHPKRRAQMTFKKSEPSQNEDDSGPPASKKNASEREEPTSSTERHRGDGEQKRP
VGRPKGSGRSGNSVIGDVQVRPKVIFKADNKWGGDGELMPTSSTHLKGAIQGRTVTFEKE
SASSLASKQSKATFDYPTTSQVLVIKEEIITTAPGQAKVKVDQEPATTHHQGCPPVAPTI
DFSKPIHVVHENGMTFTVLDGKAITLSKVPYPPLVHVNVPPPPVKVKTRGMNLTMPPSEA
ENLEVPQSIDRNGYIKRPMNAFMVWARIHRPALSKANPTANNADISVQLGIEWSKLTEEE
KRPYYVEARKLKDKHRQEFPGWIYQPRPGKRKCYPSVMSFAPESSCCSAGTSGPAAESYP
MTMMTMANTNTSSCVPYTQATGSNDHGLQVAITAAPNASQTTSPVSIFFQTTACPHPHPT
TSGGKPAERKHEASHSASNPEEAPKPRKISRQQAYYNSANEMPSTSMASSSRGLQMPLPN
MAHPRMYPPSPMPHPVGLFPTPRFPFAPPYFMPGPNFYPPGSYPYLHSPYSYPVLQPQDF
SNPMATPMATPGYPYDDNYDQHESTFSLLNRDYPFRQSGESGQRCQGQAPTASELLGSVP
LLDVRALENVFTNSASVQEVQVPNEEDEEDVRVMRIL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccacaatggacaggcatcccaagcgaagagcgcaaatgacattcaagaaaagt
gaaccaagtcaaaacgaagatgacagtgggcctccagctagtaagaaaaatgcaagtgaa
cgcgaggaacctacatcttcaacagagaggcatcgaggtgatggagaacaaaaaagacca
gtgggtaggcctaaaggcagtggacgttctggaaatagtgttattggagatgttcaggtt
aggcctaaagttatttttaaagctgataataaatggggtggtgatggagagctaatgccc
acaagttcaacacacctcaagggagccattcaaggtcgaacagttacatttgaaaaggag
agcgcatcatcattagccagtaaacagagtaaagccacatttgattatcccacgacatct
caagtgctggtcatcaaggaggagatcatcacaactgctccaggtcaggccaaggtcaaa
gttgaccaagaacctgcaacaacgcatcatcaaggatgtccacctgtggctcccactata
gacttctccaaaccgatccatgttgtccacgaaaatgggatgaccttcacagtattggat
ggtaaagccataacgctcagcaaagttccatacccaccacttgttcatgtgaatgttccg
ccacccccagtaaaggtgaagactagagggatgaatctcaccatgccaccatcagaagca
gaaaatcttgaagtaccacagagcatagacaggaatggctacatcaagaggcctatgaat
gcgttcatggtctgggcgagaatccacaggcctgccctgtccaaggccaacccaacagcc
aataatgcagacatcagtgtgcagctaggaatagagtggagcaagcttactgaggaagag
aagaggccctactatgttgaagcacgtaaactcaaagacaagcacagacaggagttccca
ggttggatctatcagcccagacctggaaaaagaaagtgctacccttctgtgatgtccttt
gctcctgaatcatcttgctgctctgcagggacaagtggacctgcggctgagtcttatccc
atgaccatgatgactatggccaatactaacaccagctcctgtgttccatacacacaggcc
acaggctctaatgaccatggtctccaggtggctataacggcagctccaaatgcctctcag
actaccagcccagtctccatattcttccagactactgcctgcccacatccccacccaaca
acctctggtggtaagcctgcagaacgcaagcatgaagccagtcactctgccagcaatcct
gaagaagctcccaaacccagaaaaatcagcaggcaacaggcctactacaattctgccaat
gagatgccctcaacaagcatggcatccagctccagaggtctccaaatgccactccctaac
atggctcaccctcgcatgtatcctccatctcccatgccacatccagtgggcctcttcccc
acccctcgcttcccctttgctccgccctacttcatgcctggacccaatttttatcctcca
ggatcatacccttacctacacagcccatactcctacccagttctccaaccccaggatttc
tcaaaccccatggctactcccatggctactccgggctacccctatgatgacaactacgat
cagcatgagtccacattttcccttctcaacagagactacccgtttcggcagagtggagaa
agcgggcagagatgtcaagggcaggcccccactgcctctgagctcctaggttcggtccca
cttctggacgtacgtgccctggagaacgtcttcaccaactctgccagtgtccaggaggtc
caagtccccaatgaggaagacgaggaagatgtgcgcgtgatgagaattctctag
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