Oncorhynchus gorbuscha (pink salmon): 124000671
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Entry
124000671 CDS
T07892
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
124000671 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124000671 (rabgef1)
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
124000671 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
124000671 (rabgef1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
DUF2336
Tautomerase_3
CID_GANP
Motif
Other DBs
NCBI-GeneID:
124000671
NCBI-ProteinID:
XP_046163176
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All DBs
Position
LG16:complement(59180551..59209647)
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AA seq
542 aa
AA seq
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MSQRKERRGIHVDQSELHCNKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWALAEK
LQREEEVAYASIQGAQSQPQAQPQASLAPFSKFEEKKTNEKTRKVTTVKKFFSPSSRTAP
KKAPTVGEEKLTGLRDWRGMFTPPWEMGSPTEALVARLRENQEGKTPSPSISRQSSIETD
RVSRDFVDFLKTLHKPGREVHKQSRAFIEIMANKKDLSADELSECVQDFYQNLSDRLMTH
FKGSSERVERVMDEVEKYIMTRLYKSVFCPETTDDEEKDLATQNRIRALHWVDIQMLCVP
VDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLACITRCSKHIFSAIKITKSEPASADDFL
PTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL
DPEDFERYMSGQASPRRPEADSGWPQVDPPTGSAASSPALSQVYQNLDLLSGLGSRQDRV
LEGVQSLQRDLITWQESVEREVQEILEKYPLEIRLPTPSAIDSDNVENDRLPPPLTPQVF
AG
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggaaggagcgccgcgggatccacgtggaccagtcagagctgcactgcaac
aagggctgcggttactatggcaatgccgcctggcagggcctgtgctccaagtgctggcgg
gaggagtaccagcgggcccggcagaagcagatccaggaggactgggccctagctgagaag
ctgcagagggaggaggaggttgcctatgccagcatccagggggcccagtcccagccccag
gcacaaccccaggcctctctggcgcccttctccaagttcgaggagaaaaagaccaatgag
aagacacgcaaggtgaccactgtgaagaagttctttagtccctcgtcacggacagccccc
aagaaagcccccactgtgggagaggagaagctgacaggcctcagggactggagaggaatg
tttactcccccttgggaaatgggctctcccaccgaagcactggtggcaagactcagagag
aaccaggagggcaagacccccagcccctccatcagccgccaatcaagcattgagacagac
cgtgtctccagagactttgtggacttcctgaagactctgcataagcctggccgtgaggtc
cacaagcagagccgagccttcatcgagatcatggccaacaaaaaggacttgagtgctgac
gagctgtcagagtgtgtccaagacttctaccagaatttgtctgaccgcctcatgactcat
tttaaaggctcttcagagcgtgtggagcgagtgatggacgaggtggagaagtacattatg
acacgcctgtataagagtgtcttctgccccgagaccacagacgatgaggagaaagacctg
gccactcagaaccggatacgggcgttacactgggtggacattcagatgctttgtgtgcca
gtggatgaagagatcccagaggtttcagacaatgtggtcaaagccataacagatgtcatc
gagatggactccaagcgggtaccccgggacaagctagcgtgcatcacgcgctgcagcaag
cacatcttcagcgccatcaagatcacgaagagtgagccagcctcggccgacgacttcctg
cccaccctgatctacatcgtgctgaaggccaaccctccacgcctgcaatccaacatccag
tacatcacccgcttctgcaaccccagcaggctcatgactggagaggacggatactacttc
actaacctgtgctgtgcagttgccttcatcgagaaactggacgcccagtctctcaacttg
gacccagaggactttgaacgctacatgtcgggccaggcctctcctcgcaggcctgaggca
gacagcggctggccccaggtggaccctcctactggttctgctgcctccagtcccgcccta
tcccaggtctaccagaacctggacctcctgtctggcctggggagcagacaggacagggtt
ctggagggggtgcagagcctgcagagagacctgatcacctggcaggagagtgtggagcga
gaggtgcaggagatcctggagaagtacccgctggagatccgcctgcccaccccctccgcc
attgactcagacaacgtggaaaacgaccggcttccaccaccactgacgccccaggtgttt
gctgggtaa
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