Oncorhynchus gorbuscha (pink salmon): 124001172
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Entry
124001172 CDS
T07892
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
ogo03083
Polycomb repressive complex
ogo04110
Cell cycle
ogo04330
Notch signaling pathway
ogo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124001172
03083 Polycomb repressive complex
124001172
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
124001172
04350 TGF-beta signaling pathway
124001172
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
124001172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ogo03036
]
124001172
Enzymes [BR:
ogo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124001172
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
124001172
HDAC complexes
Sin3A-HDAC complex
124001172
BRAF-HDAC complex
124001172
REST complex
124001172
SHIP complex
124001172
MiDAC complex
124001172
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
124001172
Heterochromatin formation proteins
Other heterochromatin formation proteins
124001172
Chromatin remodeling factors
NuRD complex
124001172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
124001172
NCBI-ProteinID:
XP_046163731
LinkDB
All DBs
Position
LG17:complement(20270878..20280605)
Genome browser
AA seq
498 aa
AA seq
DB search
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMTKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEKEGEEKKAGDDKKADDKKEVKEEKVP
EEEKMDTTKGPKEESKTP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagttctcaaggaacaaagaaaaaagtgtgctactattacgatggtgatgtt
gggaattactactatggccaggggcatcccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
agtggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttccatc
cggcctgacaacatgtcggagtacagcaaacagatgcagagatttaacgttggtgaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgctattaactgggctggaggtctc
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgca
attttagagttactgaaataccaccagagagttctgtacatagacattgacattcaccat
ggagatggagtggaggaagcgttctacaccacagaccgggtcatgaccgtgtccttccac
aagtacggagagtacttccccggcactggagacctgagggatattggcgcagggaaaggc
aagtactatgctgtgaattaccctctgagagatgggatagatgacgagtcttacgaagcc
atattcaagcctatcatgactaaagtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagctgactctctctcgggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtacatgaagagcttcaacctgcccctgctgatgctgggt
ggtggaggctataccatccggaacgtggcccgctgctggacctatgagacagccgtggcc
ctagacagctccataccaaacgagcttccatacaatgattattttgagtactttgggcca
gacttcaaactgcacatcagtccctccaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcgtctgtttgagaaccttcgtatgctgccccacgccccgggggtc
cagatgcaggccattccagaagacgccgtgcaggaggacagtggagacgaggaggaggaa
gaccctaacaaacggatatccattcgcgcccatgacaagaggatagcgtgtgacgaggag
ttctcagactctgaggacgaggctgagggtcaagggggcggacggagaaatgctgccagt
ttcaagaaagccaagagaacaaagactgaagaagacaaagaaaaagagggagaagagaag
aaagcaggcgatgacaagaaagctgatgacaagaaagaagttaaagaagaaaaggtgcca
gaggaggagaaaatggacacaacaaaggggccaaaagaggagtccaagacaccgtga
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