Oncorhynchus gorbuscha (pink salmon): 124001246
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Entry
124001246 CDS
T07892
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124001246
Membrane trafficking [BR:
ogo04131
]
Endosome - Lysosome transport
Others
Others
124001246
Endosome - Golgi transport
124001246
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
124001246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Neurobeachin
WD40
Laminin_G_3
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
SUKH_6
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
124001246
NCBI-ProteinID:
XP_046163847
LinkDB
All DBs
Position
LG17:55827303..56226665
Genome browser
AA seq
2990 aa
AA seq
DB search
MASEETPGAGRPAGQGDGAATVSLNPGIPIRGIKMKFAVLAGLVEVGEVSNRDIVETVFN
LLVGGQFDLEMNFIIQEKDSIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTDT
ALINLVLDRVAHTDSMIADLMVDMLGVLASYSITVKELKLFFSKLQGEKGQWPPHAVKLL
SVLRSMTHRNGPDSFFSFPGKSAAAIALPPIAKWPYQSGFTFHTWLRMDPINNINVDKDK
PYLYCFRTNKGLGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTIVHVYNRW
KNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADADRVFCGQMGAVYLFGEAL
SAAQILAIYQLGPGYKGTFKYKAESDLLFAEHHKTLLYDGKLSSGISFSYNPRATDAQLC
LESSPKDNASIFVHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDHLQHTSD
ELDTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRSVLDIVLAF
ARYLSNLQNGVLLLKQLCDHILFNPAIWIHAPAKVQLVLYTYLSTEFISTVTIYNAIRRV
GTVLQVMHTLKYYYWVVNPQDRSGVTPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMKDYG
VKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHHGSMVQAFDQRNGVRAIYKLLASN
SEGIRVQALKVLGYFLKHLPAKRKSEVMLGHGLFSLLNERLMLHSNQFSMTTYNVLFEIL
TEQICTQVIHKQHPDPDSNVKIVNPQVLKVIAALLKNSPLSPESMEVRRVFLSDMIKLFN
NSKDNRRSLLQCSVWQDWMLSLCFINPKSSEEQKVTEMVYAIFRILLYHAIKYEWGGWRV
WVDTLSITHSKVTFEQHKENLARMFRQYQRLGSEGDAAGIRTISGASRDSEILGQLRTNR
DQGEETAPSTVIELTIDPEGVPQNQESPNTTPHSETSTASASTPSPPEREGDRSQRGQAP
ITVSNMLARAEEEEELQQVQNQISEDQRGGAGDRAEVTTQETEAKLTGDKVSSKTVEAMT
ETDTDKTDEAAAASTAETDEATEPETEDAKVAKSETSDDATTSDTDKVVRLQTDGEKGSK
THSCKASNVLTSEDSLNEPKEPELAKRPEGQVSAAISACQEGSVAEGSAVGASVQSVSDQ
VRPSSTDDSMEESSFVSAAGGEDEEKEQEEVKTEEVVVEEEKMEEVKAEEVKTEVKTGKE
KEEESVAEVRKSAVESQATPPASVPEESQTQPPKMEEIDLNPSAPGTDPTSTEPAWQPLE
STTSPPSALEAILPAAVGATVSKSDTPQAVAPAEAPSTKGFQPEAPQATEAPSSRTDTSL
KVATATAVEAGKDSAAEGPGSVTKTKEIHIARLDVSSVASDTERLALKETSTPEVPQGDA
AGASGGQASESSSSARSTMFRIPEFRWSHMHQRLLTDLLFSIETDVQMWRSHSTKTVMDF
VNSSENVVFVHNTVHLISQVVDNLIMSCGGILPLLSAATSSSHDLENIEPSQGLSVEASV
TFLQRLINLVDVLIFASSLNFTEIEAEKNMSSGGILRQSLRLVCAMAVRNCLECQQQSHF
KPSQDSARGQQAVHSLMGTAKSMPAQSPVDVVTGGMSPIRDMDRLLQEMDINRLRAVVFR
DIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNDKKLPQRSQSARSADSNAVSGGPDL
ESSVSLRRRDSGIGDDHSSVAPREADTTAQGPDAVSEALSTLSSEVRGHRDNPTADARGG
KNVKDILRSLVSAPADDIMVDPSLLPPAFLGAAMGNNPNQFRSFDRSVRVVPKKVGGAPS
PGSSTPVPSATAAVAATGTPVNNVAVVSTGDASQSTTAEAAAGSASTNLPSVPTLSPMTR
DTAPSMSISERLEHALDKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLMCMKSSS
SVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRA
EDIHKHAEFESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAW
GSSAFSRPREFWRLDYWEDDLRRRRRFVRNPFGSTHSKATLKTAAEHVVPGINAPEEDIL
KGKQSIRSHAMGNQNSESEILLDGDDDTLSSLEEKELENLTGPVNMSTSAQLVAPAVVVK
GTLSITASELYFEVDEDEASFKTIDPKILTYTEGLHGKWLFTEIRAVFSRRYLLQNTALE
IFMANRTAVMFNFPDAGTVKKVVQCLPRVGVGTNFGLPQTRRISQASPKQLYKASNMTQR
WQRREISNFEYLIFLNTISGRTYNDLNQYPVFPWVITNYDTEDLDLTLPSNYRDLSKPIG
ALNPKRAAFFNDRYESWEDDQVPKFHYGTHYSTSSFTQMWLLRIEPFTTMFLNFQGGKFD
HADRTFSSVSRAWRNCQRDTSDVKELTPEFYYLPEMFVNANNYSLGVMEDGTVVSDVELP
PWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEATRSLNVFYYLTYEGTIN
LSSITDPMLREAVEAQIRSFGQTPCQLLIEPHPPRSSAMQVSPLMFTEQMQQDVIMVLKF
PSNSPVAHVAANTQPGLAAPAIITVTANRLFAVNKWHGLAGHQGSSVQDQQYQLPVEIDP
LIASNVGTHRRQITDLLDQSIHIHSQCFIITADNRFILLCGFWDKSFRVYSTDSGKLTQI
VFGHRDVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHSSIGENPGTEFVTPRAIL
TGHDCEVTCASVCAELGLVISGCREGPCLIHSMNGDLLRTLEGPGGCVQPRLIQSSTEGH
AVVYYDKGHFCFFSINGKLLGHMEVEENIRAMLLSRDGQYLLTGGDGGVLSVWQVHNLKQ
MFTYPGCDAGIRSMAMSNDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8973 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacgcctggtgctgggcgaccagccgggcaaggtgatggagctgcg
acggtgtcgctcaaccctgggatcccaatccgaggaatcaaaatgaaattcgctgtcctc
gccggcctggtggaagttggggaagtttccaaccgggacattgtggagaccgtcttcaac
ctgttggtggggggccagtttgacctggagatgaacttcattatccaggagaaggacagc
attgtgtgcatggtggagctgctggacaagtgtgagcccacgtgccaggcggaggtgtgg
agcatcttcacggctatcctgaagaagagcgtgaggaacctgcaggcctgcaccgacacg
gccctcatcaacttggtcctggaccgcgtggcccacactgacagcatgattgcagacctg
atggtggacatgctaggggtgctggccagctacagcatcacagtcaaggagctgaagttg
ttcttcagcaaactgcaaggagagaaaggccaatggcctccccatgcggtgaagctgctg
tctgtcctgaggagcatgacccaccggaacggacctgactccttcttcagcttcccaggg
aagagtgctgctgctatagctctgccgcctatagccaaatggccgtaccagagtggattc
accttccacacgtggctccgcatggatccaatcaacaacatcaatgttgacaaggacaag
ccttacctgtactgttttcgcacaaacaaaggtctgggatactctgcacactttgtgggc
ggctgtttgattgtgacctcgttaaagtccaaggggaagggcttccagcactgtgtgaaa
tatgacttcaaaccacagaagtggtacatggtgaccatcgttcatgtctacaaccgctgg
aagaacagtgagatcagctgctacgtcaatggagagctcgcctcctacggagaaattacc
tggttcgtcaacaccagcgacacgttcgacaagtgtttcctgggttcgtcagagacggcg
gacgccgaccgcgtgttctgtggtcagatgggggcggtgtatctgtttggcgaggccctc
agtgcagcccagatcctggccatctaccagctggggcctggttacaagggcacgttcaag
tacaaggctgagagtgacctcctgtttgctgagcaccacaagaccctactgtacgacggc
aagctgtcctctggcatctccttctcctacaacccccgcgccactgacgctcagctgtgc
ctggagtcctcccccaaggacaacgcctccatcttcgtccactcgccacacgcactcatg
ctgcaggatgtgaaggctgtggtgacccactcggtccagagtgccatccactccatcggg
ggagtgcaggtcctcttccccctgtttgcacagctggatcacctccagcacaccagcgat
gaactggacacctctgtctgttgcactttgctgtcctttgtgatggagctgttgaagaac
tctgtggctatgcaagagcaggtcctggcctgcaagggcttcctggtcatcggttacacc
ctggagaagtcttccaaggtgcatgtgactcggtccgtcctggacatcgtgctggccttc
gcccgttacctcagcaacctgcagaacggcgtcctgctgctcaagcagctgtgtgaccac
atcctgttcaaccctgccatctggatccatgcccctgccaaggtgcagttggtgttgtac
acctacctgtccactgagttcatcagcacggtgaccatctacaacgccatccgcagggtg
ggcacggtgctgcaggtcatgcacacgctcaagtactactactgggtcgtcaacccccag
gaccgcagcggagtcacgcccaagggcctcgacggtccgagacccaatcagaaggagatc
cactctctcagagcctttctgctgctgtttgtgaaacaactcataatgaaggattacgga
gtgaaggaagatgagcttcagagtattctcaactacctgctcaccatgcatgaggacgac
aatctaatggatgtgcttcagctgctggtggctctgatgtcggagcatcacggctccatg
gtgcaggcctttgatcagcgcaacggagtacgggccatttacaagctgctggcttccaac
agtgaaggaatcagagttcaggcactcaaagtcttgggctacttcctcaaacacttgccc
gctaagaggaagtcagaggtcatgctgggtcacgggctcttctccctgctcaacgagcga
ctgatgctccactccaaccagttcagcatgacaacctacaacgtgctcttcgagatcctg
accgagcagatctgcactcaagtgatccataaacagcatccggaccccgactccaatgtg
aagattgtcaacccgcaggtcctgaaggtgatcgctgccctgctgaagaactctcccctc
tccccagagagcatggaggtgcgcagggtcttcctgtcagacatgatcaaactgttcaat
aacagcaaagataacaggaggagcctgctgcagtgctcggtgtggcaggattggatgctc
tccctgtgcttcatcaaccccaagagcagcgaggagcagaaggtcactgagatggtgtac
gccatcttccgcatcctgctctaccacgccatcaagtacgagtggggcggctggcgcgtg
tgggtggacaccctgtccatcacccactccaaggtgacctttgagcagcacaaggagaac
ctggcccgtatgttccgtcagtaccagagactgggctccgagggcgatgcggctggtatc
cggaccatttccggggccagccgagactctgagattctgggccagctccggaccaacagg
gatcagggggaggagaccgccccctccaccgtgatcgagctcaccattgacccagagggc
gtcccccagaaccaggagtcccccaacactacccctcactcagaaacctcaacagcatct
gcctccacccccagccctccagagagagaaggagatagaagtcagaggggtcaagcaccc
ataactgtgtccaacatgctggccagagctgaagaagaggaggaactacagcaggtccag
aatcagatctctgaggatcagagaggaggtgctggtgacagagctgaagttactacacag
gagactgaagctaaactcactggggataaagtcagcagtaagactgttgaggccatgact
gagacagacacagacaagactgatgaagctgcagcagcaagcacagctgaaacagacgaa
gcgaccgagccagaaactgaagacgcgaaggtggctaaatcagaaacgagcgacgatgct
acaacatctgataccgacaaagtagtaagacttcaaacggatggagagaaggggtctaaa
acgcacagctgcaaagcctccaacgttcttacgtctgaagattccctgaacgaacccaag
gaaccggaactcgcaaagcgaccggagggacaggtctctgctgccatctcggcctgccag
gagggcagcgtggcggaggggtcagcggtcggggcatctgtccagtcagtcagtgaccag
gtccgacccagctccaccgacgacagcatggaggaatcctcttttgtctccgccgctggt
ggagaggacgaagaaaaggaacaagaggaggtgaagacagaggaggttgtagttgaggag
gagaagatggaagaggttaaagcagaggaggtcaagacggaggttaaaactggaaaggag
aaggaagaggagagtgttgccgaggtcagaaagtcagcagtggaaagtcaagccacacca
cctgcttctgtacctgaggagagtcagacacaaccccctaaaatggaggagattgacctt
aacccgtctgcaccaggcaccgacccaaccagcacagagccagcatggcagcctttagag
tccacaacatcacccccttcagccctggaggccatactaccagcagcagtaggggccact
gtctctaaatctgacaccccacaggctgtggcaccagcagaggcccccagcaccaagggg
ttccagccagaagccccacaggccacagaggcccccagctccaggactgatacctctctg
aaagtagccactgctactgctgtggaggcagggaaagacagtgcagcagagggccctggc
tctgtcaccaagaccaaagagatccacattgccaggctggatgtgtccagtgtggcctca
gacacagagagactggctctaaaggagacctccacacctgaagttcctcagggcgacgcg
gccggtgcctcaggaggccaggccagcgagagcagctcctccgctcgctccaccatgttc
cgtattccagagttccgttggtctcacatgcaccagcgcctgctcacagacctgctcttc
tccatcgagactgacgtgcagatgtggaggagtcactccactaagacggtgatggacttt
gtgaacagcagtgagaatgtggtgtttgtccacaacacagtgcacctcatctctcaggtg
gtggacaacctcatcatgtcctgtggaggcatcctgcccctgctttctgctgccacatcc
tcttcacatgatctggagaacattgagccgtcccagggtctgtcggtggaggcgtcggtc
accttcctgcagcgcctcatcaacctggtggatgttctgatcttcgcctcctccctcaac
ttcaccgagatcgaggctgagaagaacatgtcctctggcggtatcctcagacagagcctc
cgcctggtgtgtgccatggctgtgaggaactgtctggaatgtcagcagcagtctcacttc
aagcccagccaggacagcgcccgcggccagcaagccgtgcacagcctcatgggaactgcc
aagtccatgcccgcgcagagccctgttgatgttgtgacaggtgggatgtctcccatcaga
gacatggaccgtctgctacaggaaatggatatcaaccgcctcagagccgtggtcttcaga
gatatcgaggacagtaagcaggctcagttcttggccctggctgtggtttacttcatctct
gttctcatggtgtccaagtaccgagacatcctggagccccaaaacgacaagaaactcccc
cagcgcagccagtctgccaggagcgcagacagtaatgccgtctctggcggtcccgacctg
gagagcagtgtgtccctccgtcgccgagactctggcatcggggatgaccatagctccgtg
gcccccagagaggcggacaccaccgcccaggggcccgacgccgtgtctgaggccctgtcc
accctctcctcagaggtcaggggtcacagagacaaccccacggcggatgccaggggcggg
aagaacgtgaaggacatcctacgcagcctggtctcggcgcctgctgatgacatcatggtg
gaccccagccttctgccgccggccttcctgggagctgctatgggaaacaaccccaaccag
ttcagatccttcgacagaagcgttcgggtggtgcccaagaaggtgggcggggctccgtcc
ccaggctcctccactcctgtcccatcagccaccgctgccgtggcggctaccgggacacca
gtcaacaacgttgccgtggtttccacgggcgatgcctcccagagcaccaccgctgaggct
gcagctggatcagccagcaccaacctgccatctgtccccacgctgtccccaatgacccgg
gacacagcccccagtatgagtatctcagagagactggagcatgctctggataaggctgca
cccctactgagagagatctttgtggactttgcccccttcctctctcgcaccctgctgggt
agtcacggacaggagctcctcatcgagggcaccagtctgatgtgtatgaagtccagcagt
tcggtggtagagctggtcatgctgctctgttctcaggagtggcagaactctatccagaag
aacgcaggcttggccttcatcgagctggtcaacgagggcaggctactgagccacaccatg
aaggaccacctggtgcgggtggccaatgaggctgagttcatcctgagccgtcagagagcc
gaggacatccacaaacacgctgagtttgagtcccactgtgcccagtactcggctgagaag
cgtgatgaggagaagatgtgcgaccacctgatccgagcggccaagtaccgcgaccacgtg
acagccacccagctcatccagaagatcatcaacatcctgacggacaaacacggtgcctgg
ggaagctctgccttcagccgtcctcgggagttctggcgcctcgactactgggaggacgac
ttgaggcggcgccggcgcttcgtcaggaaccccttcggatccactcactcaaaggccacg
ctcaaaactgcagccgaacacgtggtgcctggcattaatgctccggaggaagatatcctc
aaaggcaaacagtcaatcagaagtcacgcgatgggaaatcagaactctgagagtgagata
ttgttggatggcgacgatgacactctatcatccttggaggagaaggaattggagaaccta
acaggccctgtaaacatgagcactagcgctcagctggtcgccccggcggtggtggtgaaa
ggaacgctgtccatcactgcgtctgaactctacttcgaggtggatgaagatgaggccagc
tttaagacgatcgatccaaagatcctgacctacacagagggccttcatggtaaatggctg
ttcacagagatcagggctgtcttctccagacgttacttgctacagaacactgctctggag
attttcatggccaacagaactgcggtcatgttcaacttcccagatgcaggcacggtcaag
aaggtggtccaatgcctccctcgcgtgggggtgggcaccaactttggtcttccacagacc
aggcgtatctcccaggccagtcccaagcagctctacaaggcctccaacatgacccagcgc
tggcagcgcagagagatctccaactttgaatacctgatcttcctcaacaccatctctggc
cgtacgtacaacgacctgaatcagtaccccgtcttcccctgggtcatcacgaactacgac
actgaagacctggacctcactctgcccagcaactacagagacctgtccaagcccattggt
gccctgaaccccaagagggcggcgttcttcaacgaccgctatgaatcctgggaggatgac
caggtgcccaagttccactacggaacccactactccacctcctctttcacccagatgtgg
ctgttgcgcatcgaaccctttaccaccatgttcctcaacttccagggagggaagtttgac
cacgctgaccgcaccttctcctccgtgtcccgggcctggaggaactgccagagagacacg
tccgacgtcaaggagttgaccccagagttctactacctccctgagatgtttgtaaatgcc
aacaactacagcctgggggtgatggaggatgggactgtggtgtctgacgtggagctgccg
ccctgggccaagacccccgaggagtttgtacgcatcaacagactggctctggagagtgag
tttgtgtcgtgccagctgcaccagtggatcgacctgatctttggctacaagcagcagggt
cctgaggccaccaggtctctcaacgtcttctactacctgacctatgaagggaccatcaac
ctcagctccatcaccgaccccatgctcagagaggctgtggaggcacagatcaggagtttt
ggacagaccccatgtcagctgctcatcgaaccacacccaccaaggagctccgccatgcag
gtgagcccgttgatgttcacggagcagatgcaacaggatgtcatcatggtgctgaagttc
cccagcaactcccccgtggcccacgtggccgccaacacccagccgggcctcgccgcgccc
gccatcatcaccgtcaccgccaaccgcctcttcgccgtcaacaagtggcacggcctggcc
ggtcatcaaggctcctctgtgcaggaccagcagtaccaactgcccgtggaaatagacccc
ctgatagccagtaacgtggggacccaccgtcgtcagatcacagacctgttggaccagagc
attcacatccactctcagtgtttcattatcaccgcagacaaccgcttcatcctgctctgt
ggcttctgggacaagagcttccgcgtctattccactgactcagggaagctgacccagata
gtgtttggtcaccgtgacgtggtgacgtgtctggccaggtctgagtcgtacatcggaggg
gactgctacgtcctgtcaggctccagagacgccacgttactgctctggtactggaacgga
aaacacagcagcatcggagagaaccccggaactgagtttgtgacgcccagagccatcctg
acgggtcatgactgtgaggtgacctgcgccagtgtgtgtgccgagctgggactggtcatc
agtggctgcagagagggcccgtgtctgatccattccatgaatggggacctgctgcggacc
ctggagggcccggggggttgcgtgcagccccgtctcatccagtcctctacagagggccac
gccgtagtctactacgacaagggacacttctgcttcttctccatcaacggaaagctgctg
ggacacatggaggtggaggagaacatcagggccatgctgctgagtcgggacggacagtac
ctgctgacggggggagacgggggagttctgtctgtctggcaggttcacaacctcaaacag
atgttcacctaccctggctgtgacgcaggcatccgctccatggccatgtccaacgaccaa
aggtgcatcataaccggcatggcgtctggtagtatcgtcctgttctacaacgacttcaac
aggtggcaccacgagtaccagaccagatactga
DBGET
integrated database retrieval system
