Oncorhynchus gorbuscha (pink salmon): 124001253
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Entry
124001253 CDS
T07892
Symbol
srrm1
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124001253 (srrm1)
03015 mRNA surveillance pathway
124001253 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124001253 (srrm1)
03041 Spliceosome [BR:
ogo03041
]
124001253 (srrm1)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124001253 (srrm1)
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
124001253 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
124001253
NCBI-ProteinID:
XP_046163861
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All DBs
Position
LG17:20333493..20347157
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AA seq
875 aa
AA seq
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MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKENKDNRERESPRRRKSRSQSPRRRSPVKRE
RKRSHSRSPRRKPSPSSSPPPTAPAVTLVSVTLPQGTEEPQPEPDTSESAVPEPVIQEAS
STSDLVKPHTVVVVPDSVMKVKEPSPGKASKKERPKPREKEGRRDRPRHRSRSHSRRRPK
SRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGSNSSAP
RSPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPPGKARRSASPRARKGRSSAS
PSRSAGSKKKLGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGSS
SSSEDEGSKRPGGGPAARNGNVRRRRSRSPSSPRRRHRDGSPRKRRSPSPGGRRSPPRRR
RSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKCLSPMPK
RRPSRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRGTRSPPAVHSNRLSPSPV
NRGRAMRGSASPQGRFDSSGTSPPGLRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQP
MRRASSRSPSGSPKPGALKRPAPASGFPSSGCSASGSPSAPLAKKASSGSGSPSPNKNSD
TEAGGKKNKKHKKEKKHKKDKKHKKHKKHKKEKSGVLVAAGDGQENLGMEEDVDSDLKKE
SDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaagtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaattcgtatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tctgccttcctggaacagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaaggaaaacaaagataacagagaaagggagagc
cccagaaggaggaagtcaaggtcacagtctccacggcgacggtctccagtgaagagggag
agaaagcggagtcactcccgctccccgaggcgtaagcccagtcccagcagctcccctcca
ccaacagccccagccgtcaccctggtcagtgttacattgccccagggcactgaggagccc
cagccagagccagacacctctgagagcgcagtacctgagccagtcattcaggaggcctct
tccaccagtgatttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaag
gtcaaagaaccctccccaggaaaggcttctaaaaaggagaggcccaagcccagggagaag
gagggcaggagggacaggccccgccaccgctctcgctcccattcccgcagacgacctaaa
tcgcggtccagatcttactccccacgccggaggccgagccccaggagacggatgtcccct
cgtcgtaggagcccccccaggcgtggccccccaggccccagacacaggcgcagtcgctcc
cctgtccgcaggcggcgctctcgctccccatcatcctctgggagcaactcctccgcgcct
cgctcacctcagaaggccatgaagagaacgtcaaccacacctcctaggaaacagccccgc
ggccacgcagctgatccctccctcagcccctccaggagaagagcccccaatggcagcccc
cctgggaaggcccggcgctctgcctcccctcgggctagaaagggccggtcctcagcctcc
ccgtccagatcagctggttcaaagaagaaactaggatcaaggaatgattcactgtctcct
gttccaaaacccaggcattctgaggcatcggaatcagagggggctaccgcagatcctgtg
cagcagcgacgtcagtaccgcaggcagaatcgggagacgtcttcagatacgggatcatcc
tcctcatcagaggacgaggggtccaagaggccgggcggagggccagcggcaaggaacggg
aatgtcaggaggcggcgcagtcgctccccctcctcccccaggagacgacacagggacggc
tcccccagaaaaagacgctccccttctcctggaggacgccgatctcccccacgccgtcgc
agatctccctctcctcctccgagacgcaggtctccctctccacctcctcgcagacgctcc
ccctcccccagacggtactctccccccatccagcggcgctacagccctactcccctgggc
ccacagaagagaaggctatcggggtctccccctcccaaatgcctttccccgatgcctaag
cgccgtccctccaggtccccgaagcgcaggagtccccctccccaaaagagacgcacacct
cccctccccacctctcccccccgacacaggaggagccccatgctcccatccaaccggcca
ggccggggcacgcgctccccccctgctgttcacagtaaccgcctctccccctcccctgtc
aaccgtggccgggccatgcgtgggtctgctagtcctcaggggcgctttgactcctcgggc
acctctccacctggcctgaggcgccaggtgtccccctcacacagcaacagggcaatccgc
agggtgtcccggacaccagagccccgcaagaaccagagagcctctcaaagccctcagcct
atgaggagagcgtcatcaaggtcaccgtctggttctcctaaaccaggagccttgaagcgg
ccggccccagcctcaggcttcccctcatctggctgctcggccagtggctcgccatcagcc
cctctggccaagaaggccagcagcggctctggcagcccttctccaaacaagaattcagac
actgaggctggaggaaagaagaacaaaaaacataagaaggagaagaaacataagaaggac
aagaagcacaagaagcacaagaaacacaagaaagagaagagtggagtgctggtggctgct
ggggatggccaggagaacctggggatggaagaggatgtagactccgaccttaaaaaggaa
tcagacagtgaagtagaagagcgtctggacgacctggagaagcacctgcgagagaaggca
ctgcgttccatgaggaaagctggaaagctgtccccgccactgtcttga
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