Oncorhynchus gorbuscha (pink salmon): 124001304
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Entry
124001304 CDS
T07892
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124001304
03041 Spliceosome [BR:
ogo03041
]
124001304
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124001304
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124001304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
CDC45
Transformer
DUF3525
Motif
Other DBs
NCBI-GeneID:
124001304
NCBI-ProteinID:
XP_046163941
LinkDB
All DBs
Position
LG17:complement(19105990..19149389)
Genome browser
AA seq
1475 aa
AA seq
DB search
MEAVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKQEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAPVNNATPGTPATPATPANIVSSLPDWAS
QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAASANPMHLNPLDQRVSSFNKKMLGHFDFGNDSERSEESKKDSQSSQMPMVSDSIFHQ
LAEQLQQQNLEQLQKQLMEHQQHQQKDGIFGSENTPQQSSSQSQHPEPDNKIDDSIENQQ
QDMDMDLDDGPEMDEEIFEPADKRSKTIDIQSRTRSRSRTRSPRKRRSRSRSGSRKRKHR
KRSRSRSRERKRKLSRSYSSERHARELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKA
TPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYQARQKLSTGSHKIVSKVIKIAW
ALNKGVKQEYKQLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPEP
VKEAVSQAVSAEPMAATNSQQTQQNAFIQQVSMMPVQLPVAQAVPAGGLVPPSFPVSMTM
PPPGYGPPPTFLRAGFNASQPPPGFMQAAGVPQQAGMGSAPISLVQPSMSQAQDSMKDSP
YGATVPGSFMPSAIPGQGVFNPLQPGVQTQQGANDKTGQSADGMDAAAELVLQGMQNAMS
RRMGLLGMHPSASLTHPLQQQGLPGQRMPGLMPLDLRPSMLQGAGARFPLLMQQGLTQQS
ILDASLHAQARARAASQMDHFNRAEGAFNRGPNPPNENMSKAEDQPSSRANESQQGRDQD
YRFPPPQEKQSTGLLRTPPLEHRESMGGGGRGGGAGGGGAGGGGMGGGGGRPALLQTPVR
EPARDSVVGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGISKGFQEERPVSNQGQN
FHNRFENQNRAGAGGVGAGGPGGGGVGGGPAWSRGGAAAPFADADMPQDLDERRRAWDRQ
QRERDDREFDLRKEMNGNRRERDSREKDRERERERDRERERDHGRERGNREREQECDRER
EREKERERDRERERERDRNKRGGWTPLLPLPQPLLPTPALTPTLSLTQGKSQALLQLQSR
LQPKPGFLPKPGLLQTPILLTRSTSQVPTKFLQAPSQSPTQAKNEALPGPEPQTESQSST
QTHASPKSESSPQTQSSPQNQSSPQNLVSPQAQLPSPPQAQSPPWAQLPPQALSPPQAQT
PPQALSPPPAQSPPQALSPPPAQLPPQAPSPHQEITDTQEEPEKLQEEPMEEPEPIEEPP
SQLVYGTGLRMDTDVVAEPTPERAPTPTLSPTPAPLSMSLVLTHRSEEPQCLPEPLDVQQ
PPQHASSSPKDNGLSEPMEEAEKQPVVEQTDTEGT
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtcaaagcattcaacgacgagctctactctctgaatgagtacaagcctccg
atctccaaggccaagatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagagcgtggagaagttcgttcagaaatgcaagcaagagtacaaggtc
ccaggcctgtacgtcatggactccattgtgcggcagtcacgacaccagtttggccaggac
aaggatgtgttcgccccgcgcttcagcaaaaacataatcggaaccttccagcacctctac
cgctgcccctcagatgacaagagtaagattgttagagtcctcaacctgtggcagaagaac
gccgtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactaccccct
cccagtgtcacccctgtcatgaccagcagggatgctccggtcaacaacgctacgcctggt
accccagcgaccccggccactccagccaacattgtgtccagtctgcctgactgggcgtct
cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga
caacagctccagcagctggtgcagagtctgcagatgcagcagcagaagccccagccgtct
ctgctgcaggcgctggatgcaggcctggtggtccagctacaggccctgacggcccagctc
actgctgccgcctcagccaaccccatgcacctcaaccccctggaccagagggtttcctcc
ttcaacaagaaaatgttgggtcattttgactttgggaatgattcagaacgctctgaagaa
tccaaaaaggactcgcaatcatcccagatgcccatggtgtctgactccatcttccaccag
ctggcagagcagctgcagcagcagaacctagagcagttacagaagcagctcatggagcac
cagcagcaccagcagaaggatggaatctttgggtctgagaacacaccccagcagagcagc
agccaatcacagcacccggagccagacaacaagattgatgactccattgaaaaccagcag
caggacatggacatggacctggatgacgggccagagatggacgaagagatcttcgagcca
gcggacaagaggtccaagacgattgacatacagtcaagaacacggtccaggtcacgaacg
agatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaacatcgc
aagcgatcgcggtcacgctccagagaacggaagaggaagttgtcgcggtcctactccagc
gagagacatgcccgcgagctagagaaagagcgtcagaagaaaggactgcctccaatccga
tccaagtttctcagtgtgtgcagcaccactctgtgggtgggacaggtagacaagaaggcc
actccgcaggacctcaccaatctgtttgaagagtttggtcagattgagtctatcaatatg
atccctccccgtggctgtgcctacatctgtatggtccacagacaggatgcctaccaagcc
agacagaaactcagcactggttcacacaagatcgtctccaaggtcattaagatcgcttgg
gcgctgaataagggagtgaagcaggagtataagcagttgtgggacatggacctgggggtc
acctacatcccctgggagaaggtcaagctggacgacctggacggcttcgctgagggaggc
atgatcgaccaggagactgtcaacgccgagtgggaagcagccaaaaatgcaccagagcca
gtgaaggaagcggtgagccaggctgttagcgctgaacccatggcagccactaattcccaa
cagacccaacaaaatgccttcatccaacaagtctccatgatgcctgtgcagctccctgtg
gcccaggctgtccctgctggaggtcttgtgcctccatccttccctgtttccatgacaatg
cccccgccaggctatggccccccgcccaccttcctcagagcagggttcaacgcctcccag
cctcctccaggtttcatgcaggcagcaggtgttcctcagcaagcaggcatgggctcagct
cctatatctctggtgcagccctccatgtcgcaggctcaggacagcatgaaggactccccg
tacggagccactgtcccaggaagcttcatgccctctgccatccctggacaaggggtcttc
aacccgcttcaacctggagtccagacgcagcaaggagccaatgacaagacgggccaatct
gctgatggcatggacgctgctgcagagttagtactgcaaggtatgcaaaatgcaatgagt
cgtcgtatgggtcttctggggatgcacccctcagcctccctcacccaccccctacaacag
cagggcctgcctggccagaggatgcctgggctaatgccgctggacctccggcctagtatg
ctccagggagccggggcccgcttccccctcctgatgcagcagggcctgacccaacagagt
atcctggatgcgtccctccatgcacaggcccgcgccagagcggcctcccagatggaccac
ttcaacagggccgaaggggccttcaaccggggtcccaaccccccaaatgaaaacatgtct
aaggctgaagaccagccttcctctcgggcaaacgagagccagcaggggagggaccaagac
taccgcttccccccgccccaggagaagcagagcacaggcctgctgaggacacctcccctg
gagcacagagagtccatgggtggaggtggacgtggtgggggagctggtggtgggggtgct
ggtggtgggggtatgggcggaggaggaggcagacctgccctgctgcagaccccagtaagg
gagccagctagagacagcgtggtagggcggcttcaggccctcgccggcttcaccccccag
acccagagtcgctgggggccacctagaggggactttgatgagcgtgacatgcggggctca
ccagccgggatctccaagggcttccaggaggagcgccctgtctccaaccaggggcagaac
tttcacaaccgatttgagaaccagaaccgcgctggggcaggaggagtaggtgctggtggt
cctggtggcgggggtgttggagggggcccggcgtggagtcgtggtggagctgcagccccg
ttcgctgatgctgacatgccacaggacttggatgagcgccggcgcgcttgggacaggcag
caacgggagagggacgacagggaatttgacttaaggaaggagatgaacggcaaccgccgt
gagagagatagccgcgagaaagaccgggagagggagagagagagggaccgggagagagaa
agggaccatggccgtgagcgtggcaaccgtgaacgagagcaagagtgcgaccgggagaga
gagcgtgaaaaggagagggagagggatcgggagagagaacgtgagcgggaccgtaacaag
cgtggaggctggacacctcttctccctctaccacaacccctacttcctactcctgccctg
accccaaccctctccctgacccaaggcaaatctcaggccctgctgcaactacagtccagg
cttcaacctaaacctggattcctacctaaaccgggtctgcttcaaactccaatcctccta
actcggtcaacatctcaagtcccaaccaagttccttcaagccccatcccagtctccaact
caggccaagaatgaagccctccccgggcctgagccccagacagagtcccagtcctctacc
cagacccatgcttcccctaagtctgagtcctcaccccagacccaatcctctcctcagaac
caatcatcaccccaaaacctggtttcccctcaggcccaattgccgtcccctccccaggcc
cagtctccgccatgggcacagctcccaccacaggccctgtccccaccacaggctcaaaca
cctccccaggccctgtccccaccacctgcacagtcgcccccccaggccctgtccccacca
ccggcacagttgccaccccaggccccgtcgccacaccaggagatcactgacacccaggaa
gagccagagaaactccaggaagaacccatggaagagcctgaacccatagaggaacctcca
tctcagttggtctatgggacggggttgaggatggacactgacgtagtggctgagcccaca
cctgaacgggctcccacccctaccctctcccccactccagccccactctcaatgtcactt
gtcctcacacaccgctctgaggaaccccaatgcctgccggaacccctggacgtgcagcaa
ccaccacagcatgcctcctcctcccctaaggacaatggactgagtgagccgatggaggaa
gctgagaaacagccagtggtagagcaaactgacactgaggggacataa
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integrated database retrieval system
