Oncorhynchus gorbuscha (pink salmon): 124001380
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Entry
124001380 CDS
T07892
Symbol
srsf5a
Name
(RefSeq) serine and arginine rich splicing factor 5a
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
ogo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124001380 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124001380 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124001380 (srsf5a)
Spliceosome [BR:
ogo03041
]
Common components
Common spliceosomal components
SR proteins
124001380 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
124001380
NCBI-ProteinID:
XP_046164090
LinkDB
All DBs
Position
LG17:complement(3288427..3296410)
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AA seq
312 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREVNLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGMGGGGGGGGGGRFSPRFSSYRQGSGGHSGGSSRYGPP
VRTEHRIIVENLSSRISWQDLKDLMRKAGEVTFVDAHRTNKNEGVVEFASHSDMKNAIDK
LDGTDLNGRKLKLSEDRKSRHSRSRSRGSRSYSRSRSRSPRSKSRSRSRNRSRSPRSRSA
SRTPEKKDSSAGGGRAAHRSTSRSPSRSRSPAPRSRTPPPRSRSRTPPPSSPVPARKQSP
SRARSPSVESQH
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatgtcgtgtgtttatcggccgtttgagcccccacgcccgtgagagagacgtg
gagaaattcttcaagggatatggacggatccgagaagtaaatttgaagaacggattcggc
tttgtggagtttgacgaccatagagatgcggatgatgccgtatatgagctgaatggcaag
gaactctgtagtgaaagggtgacgatagagcatgcccgctccagaagagggaggggtggt
ggaccagggatggggggtggtggtggtggaggaggaggaggacgcttctcacctcgtttc
agcagctaccgccagggctctggcggtcatagtggtggctccagtaggtatggtcccccg
gtgcgaacagagcaccgaatcattgtggagaacctgtcgtcacggatcagttggcaggac
ctgaaagacctgatgaggaaagctggcgaagtcacctttgtggatgcacacagaaccaac
aagaatgaaggggtggtggagttcgcatcacacagtgatatgaagaatgccattgataag
ctggacggaacggacttgaatggacgcaagttgaaactgtctgaagatcgcaagagccgc
cacagcaggagtcgttcccgcggctctcgtagctactcccggtcccgtagccgttcccca
cgctccaagtcccgtagcaggagtcgtaaccgctccaggagcccccgatctcgctcggcc
agccgtaccccggagaagaaggattcctctgcaggagggggcagggctgcacatcgctcc
acctcgcgctccccgtcccggtccagatcccctgcccctcgctcccgtacccctccccca
cgctcccgttctcgcactcctcctcccagttcccctgtcccagcccggaagcagtctccg
tcccgggctcgctccccctcggttgagagccagcactga
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