Oncorhynchus gorbuscha (pink salmon): 124002100
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Entry
124002100 CDS
T07892
Name
(RefSeq) interferon regulatory factor 3-like
KO
K09447
interferon regulatory factor 7
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04620
Toll-like receptor signaling pathway
ogo04621
NOD-like receptor signaling pathway
ogo04622
RIG-I-like receptor signaling pathway
ogo04623
Cytosolic DNA-sensing pathway
ogo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124002100
04621 NOD-like receptor signaling pathway
124002100
04622 RIG-I-like receptor signaling pathway
124002100
04623 Cytosolic DNA-sensing pathway
124002100
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124002100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124002100
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
124002100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
124002100
NCBI-ProteinID:
XP_046165339
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Position
LG02:complement(38582474..38592206)
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AA seq
416 aa
AA seq
DB search
MQSCKPQFADWLIEQVRTEQYTGLFFIDNNKFRVPWKHNSRKDCSEDDRKIFRAWAVVSG
KINEHPTDKAKWKTNFRSALNSLCRRFKMVEDHSKDSNDPHKVYLVINEYNYESPHREEI
TLENYGLDCALIPTENTPLGMEHDILNFSNLTLNPLDLNQHTENSIPVHTHHPVPPVLVQ
QPYYQVNPDALLNLPAVHSSLWDLEITISYRGSEMRKTQVSGPRVQLHYQCNALEPNTQP
LCFPSTDGLPDHKQIEYTNCILGSVQRGLLLEVQNTGIYGYRQDKCHVFSSTSDPREAHP
EPRKIPQNEMVQLLSFQQYENELIAFKENRRGSPDYTIHMCFGEKFPDGKPLEKKLIVVK
VVPLICRYFHEVAQEEGASSLQNDNISLQISHHNSLMELINATWPDGPQHTMGQYF
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagctgcaaacctcagttcgctgactggctgatagaacaggtgcggaccgagcaa
tacactggtttgttctttattgacaacaataagttcagagtcccgtggaaacacaattct
aggaaggattgctccgaggacgaccgtaaaatattcagggcatgggcagtggtcagtggg
aaaatcaatgagcatcccactgacaaggcaaagtggaagactaacttccgctctgcactg
aacagcctgtgcaggcgtttcaagatggtggaagaccactccaaggactcaaacgacccc
cataaagtctacctggtcatcaatgagtataactatgagagcccgcacagagaagaaatc
actctggagaactatggccttgactgtgctctcatccctacagaaaacacacccctaggc
atggagcatgatatactgaactttagcaacctaaccttgaaccccctagacctgaaccaa
catacagagaattctataccggtacacacacaccacccagtgccaccagtcctagtacag
cagccatactaccaagtaaatccggatgccctgctcaacctgcctgctgtccactcatcc
ctctgggatttggagatcaccatctcctatagggggagcgagatgcgaaagacccaggtg
tcaggccccagggttcagctccactaccagtgtaatgctcttgagcccaacacccagccc
ctctgcttccccagcactgacgggttgccagaccacaaacagattgaatacaccaactgc
atcctaggaagcgtccaaaggggtcttctcctcgaggtacaaaacactggtatctatggt
taccggcaggacaagtgccacgtgttctccagtactagcgaccccagagaggcacaccct
gaacccaggaagattcctcaaaatgaaatggtacaactgttgagcttccagcagtacgaa
aatgagctgatagcatttaaggagaacaggcgaggttctcctgactataccatccacatg
tgctttggtgagaagttccctgacggaaaacccctggagaagaaactcattgttgtcaag
gtggttcccctgatctgtcgttacttccacgaggtggcccaggaggagggggcgtcgtcc
ctccagaatgacaacatcagcctgcagatctcccaccacaacagcctgatggagctcatc
aatgccacctggcccgacggcccacagcacaccatggggcagtacttctag
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